Gene detail

Detailed information of ENSZWYP00000029766.1 in Lamellibrachia columna Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ENSZWYP00000029766.1	ALANYL-TRNA SYNTHETASE	chr8	5199520	5227833	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

ENSZWYT00000029766

ATAGACGAAGAAGAGGATCGCTACTTGCAGGTTATAGGAGAGGGTAACAAGGCCCTTGCGAAGGCCCTCAACAAATACGGGCCTGTTTCCTGTCTCACTGGGGACCAGATCCTAGAACTGGAGAGGGGACGGTTTGGGGGTTCATGTGCCAGTCCACATCCTCCAGGACCTGACTGAGGACCGAGGTCTTGGTCTCAACACCAAGGAATTCGAGGGATAGTCAACAGTCTAAACGTACTCAACCACTATATGTTTCCATCAAGATACTATCTGCTTACTCGTTGCGTCCTATATAAaaggGTTTATCCGACCTCCGTCTGTGTGGTTTCGCTCGGTGTCCCTGTCAACGAACTGCTGACGGATCCAAAAAGTGAACTCGGCCTACAGCACTCGGTTGAACTCTGTGGAGGATCACATGTTCACAACACTGGCCACCTGGGGGCGCTAGTGGTAACCAACTTCCTGGGTATAAAGCAAGGTACAAAAATGGTAATAGCCATGACAGGCGCGACAGCAAGGCAGGCAATAGCCAATGGGAAAAGGTTAAGGTCACAACTTGACCGTCTCCGGCAGTGGACAAGTACTGGCCAGAAGAGGACACTATGGGTGGAAGAAGTTCAAGCCATTGAAAAGAGTTTGTCAGCACAAGACATTTTGCTGTCAAAGATTGACCGTGACGACATAGAGAGGGTGCTACAATCGCTCCAGATCAACGTCCATAGTGCAGAGAATAACAAATCAGTTAAAGATGACCTTCGACAGATAGTCACAGTGTTGGCCACGACAAACCTGATTATGGCATTGGTGCTTctggtgccacctagtgacaaCGAGAAGCGGAAGATCATCCAGGGTGTCATATATATTCCACAGaacttCAGTTGTCAGATCACCGCCATGGAGGTCGGAGCGCACATGTGCAGCGCTGTCACCAATGGCAACCACTGGTCACCAAAAGGAAAATATGCAAAGAAAACAAACATCGGGATTTTCACCTTCAGTGGCAAAGATTCGTTACAGTTGATGCAAGCAGTGCAAGTGTCGAGCCTCGGTGAAGTCATGTGTCCGCCGGGGTCGTGCGGCGACCTGAATGTTCGATTCGTCTTCAACACTACACAGAACAGAGTCGTGTTATGTCTTGTTGGGAGACAGACACTTTGTcgaccattgaactgtgtggccgccattgaactgtgtggccgccattgaactgtgtggccgccattgaactttGTGGctgccattgaactgtgtggccgccattgaactttgtggccgccattgaactgtgtggccgccattgaactgtgtggccgccattgaactgtgtggccgccattgaactgtgtggccgccgaTTTCCGTGACAGTTATCCACCACCTGCCTTACTGCATTGTCAAGGCGATGACTTGTGGAAGTCGCCAAGTTCTACGATCGGAGAAATGACGAGAACTTCTCTTCAGTTCAGAGTTCACCACAGATTATACAAGTTCTTTACCAGTTCCATATCCgtatttcaggaggctaaatcggactatttattgcagttaattgtaactccagaaatgatagcttagaaaataaaggcaacgaaggacaataaatcacatggagtggATGAAATTCCTCAAAAACCACTAATGGAAACAgcagaacaaattaatatactacatgcaagagtgttcaactttaAAAATGGTTTGAGTAATAAGCCAGATAATTACAGCCCAGATAGTTTAACAGCACTGATTGgtaaattattataaaggttaattaaagaacatggtggacttccttgttaggcataaattattaaatccatctcaacatggattcccaAAAGCGACGTCattcttaacaaatatgttttttggaagaaatcactctATTATTATCAATATACATCAATAACTTGAATGATACtctaacaagcaatgtactgaaatttgcggacgacacacaAGTGTTTAacagggttaacaatgatggtgataaacaacatttacaaaacgatctagacaattTAGTTAAATAGTCT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07973	tRNA_SAD	Threonyl and Alanyl tRNA synthetase second additional domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012947	Domain	Threonyl/alanyl tRNA synthetase, SAD	Interproscan
IPR018163	Homologous_superfamily	Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily	Interproscan
IPR050058	Family	Alanine--tRNA ligase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11777	ALANYL-TRNA SYNTHETASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0002161	Molecular Function	aminoacyl-tRNA editing activity	Interproscan
GO:0004812	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0004813	Molecular Function	alanine-tRNA ligase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006419	Biological Process	alanyl-tRNA aminoacylation	Interproscan
GO:0043039	Biological Process	tRNA aminoacylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-