Gene detail

Detailed information of Hgig_17409 in Hirondellea gigas Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Hgig_17409	D-RIBITOL-5-PHOSPHATE CYTIDYLYLTRANSFERASE	Chromosome17	319177231	319189971	-

Gene Structure

More details in Jbrowse Sequence

CDS

Hgig_17409

ATGATCCATTGTTTACGAGCATTGCTGGAATGTCCTCGGCTACCTCCAACAAACAGAGAAAAAATTATCAAATCTCAACACAGAAAAATCCGCGAAAATGACACATCCAATATTAAAACATGCCTAACTGCTGCGAACCACAGCAAAAATAAAAAGATTTCTAAAACAAACGCACTAGTAAAGCGAGATGAAAATACCGAACGACCTGACACTAGTTCCATTCTAAATGATGACCGGTTGGATGGGCCTAAAATAACACCCATTGGAACTCCACATGATACTACTGTCAAAAGTTGCCTCGTAACTACCAAAGCAACTAATACAATGACAGCACATAGCCAAAACTTCAAAGAACTAAGTTGTGGGATTCAGAATGACGAAAAACGTTTAGGTAAATTGAATTCAAATAAAGAAACTAATACAACACATCAGCGAAACTTCAAAGACCTAAATCCTAGCATTAGTGATTATGAAAAAGGCTTGGGTGAATTGAAATCATCTGGAGAAACTAATATAATGACAACACATAACCAAAACGTTGAGGAACTAAGTCTTAGAATTCAAGATAACGAAAAGCGCTTGAGTAAACTTAACTCAACTAAAGAAGCTAACGTAATAATTCATGACCAAAACTTCAAGGAACTAAGTTCTCAGAAACCTTTAGATGGGTTGAAATCTATTGAAAAAACGAATGTAACACATGACCAAAACTTCAAGGAACTGAGTCCTGAAAAACACTTTGATGAATTGAATTCAACGGTCCCTGCCACACTCCACCACGAGCAACAGAACCGCCGTCTTCTTCACAGAGTTATAGTTGTTGTAGACGACGTTGACATTGTGAAGAAAATTCTATTGGATGCAGGGCTGGATATGATAGAAGTAGTGAAGTCTGGAGGTAGCAGTCGGCACGACAGCATCTACAGTGGTCTGCGGGCCCTACAAGGAGACCAGCCAGACGTAGTGGTGGTGCATGACGGAGCCAGACCACTGGTGCCGCACCAGACGTTGAGACAGGTTGTGGCTGCAGCGCACAGAAGAGGGGCAGCAGGACCAGTGCGCCCCCTGGTGTCCACAGTGGTCAAAAGACAAGAAGACGGCCTCATGTCGGAAAGTCTAACACGATCTTTATACCGCAGCACCGAAACACCACAGGCATTCCACTACGTTATGATACTGCGAGCTTTCCAACAATGTTCAAAGAGCGAGATGCAGCAAGGAACCGAAGTGCTAGCGTTGGCCGTATCGCAGGGCATCTCTCCAATGCTGGTGGATGGAGGGTCAGACCTCTGGAAGGTCACACATCTTGAGGACGTAGAAAAAGCCCGAGCTATTTTAACCAAGAACAGGAGGTTCCTCTCTATTATCTGCCTTCCATGTGACCACTCAGAGAACAGTGCAACGTCTCTGATACCACGGGAACCCGAGAAGAATTCTCTAACATCGCAAATAAAAGAGCATTGGAAAAATAGTGGCAATGGTGGAGAAATTAATTTAGAAACACGTCATGAAACACCTGCCGATAAACAAAATAAGAACATTGACGAAGAGAATGTCAATAAAACGATTTGCAGTATACATCAAGTTGCTTCTAATACACATGGAAAAAACTACAATACATCTCAAAGAATGACATCTGGCTATCTGAGCGAAGGAAATTGTATCGAACCAAACAATAAAAAGCTTAAAATATGTAAAATTGTGGAGAACTCAAATACGAAGCCAGAATCTGACAGTTTACTTCACGAAGAGGATTCGCTGTCCAGCAGGTCAGCGGCGACCAGCAGTGTCGCCAGCGACGACGCCGGTGACATGGATCTCACCCTGGGCAGCCCTGAGCTCATCCGCAGCGCCAGCCTTATTTCTGTGGACTCTGCGGCCTCTGCAGCCTCTGTAGAGGGTGGCGACTGCGACAAGATGGCCCACCTCGCCGCCTTCTTCCAGTTTGACAAGACCCACGCCACCTGCGCCAAGTGTGGCACCAAACTGAAGCTGCAGGAGAAGAGTGTCTTCAACCTCAAGAAGCACTACAAGGCCAAGCACATCAGCTTTGAGGGAGACTTCCTGGCAGCCTTGGCTGGCGGCAGCAAGAGGGGCAGGTCGTACTCTAGCCAGGACAAGCCTGACGCCAAGAGGAGGCAGACCAGCATAGAGGCGGCCTTTAAGACCAACTTCAACCAGAAGGAGGCCCTGGACCTGTACTACAGGTTTTTCATCTCAGACATGCTGCCCACCATCCACACAGACTCTGAGCCGTTCCGCCAGTTCCTGGCGTACATCTGCCCAGAGTTCCAGGTCCCCTCCAGGAGGAAGCTCATGCGTGACATGAAGCGCATGGGGGAGAAGGCCAAGGTCAACCTCAGCGACGTCCTGGCCAAGCAGGACTATGTGGCGACCACTGCTGACAGCTGGTCTTCCCACCACAGATCCTTTCTGGGCATGACAGTGACCTGGCTGGACAAGGAGACGCTGGAGAGGTCCAACGCCGTCCTGGGTGTCAAGGAGCTCAAGGAGGCAAAGACTGGCGAGTTCTTGGCGGACGCCATGTCAGAGCTCCACCAGGAGTTTGGCATCAACAGAAAGGTCGTCACAACAACTACAGACAATGGCGCCAACTACGTCAGCGCCTTCAACCAGTTTGGCGTGGCCGAGGACGATAAGGAGAGGGAGGAGGAGGACCCTGAGCTGGTCAACTCCACGCCCATCCTGGTGGGGGAGGCCCTGGAGGGGACCAACCACGACATCCTCCTGCCCAAGCACCGCCGCTGTGGGGCCCACACGGTGAACTTGCTAGCATCCAAGGACACCGAGAAGGTGCCGGGCTGGACCTCCACCCCCAGGCCAGCCTTCTCCAAGCCTGCTGCCAAGGCCCAGGGCATCTGGAACGCCCAGAACCGGAAGACCGTGACAGCCAACGACATCAAGGCGGCCATGGAGAGGAAGCTGGTGACACCTGGGGTCACCAGGTGGAACTCCAGCTATGACGCCTACAAGTGCCTGTCAACTGAGGTGTCTGACCAAGAGAAGCTCAACAAGCTCAACAAGATCTGCCAGCGGCAGCACCCCCACGCCCTGCCGCTGATCCTGGAGGAGGACAAGGAGGTCTGGTCTGAGTATGTCAAGGTGACAGCTCCCTTGGCTGTCTGCCTTGACAAGCTCCCTTGGCTGTCTGCCTTGACAAGCTCCAAGCAGAGGAGAAGGCTTTCATGGGCTGCCTACTCCCCCAGCTTAGATTGCTGA

Transcript

Hgig_17409

GTTTGTGGAGAAGCATTGATGATCCATTGTTTACGAGCATTGCTGGAATGTCCTCGGCTACCTCCAACAAACAGAGAAAAAATTATCAAATCTCAACACAGAAAAATCCGCGAAAATGACACATCCAATATTAAAACATGCCTAACTGCTGCGAACCACAGCAAAAATAAAAAGATTTCTAAAACAAACGCACTAGTAAAGCGAGATGAAAATACCGAACGACCTGACACTAGTTCCATTCTAAATGATGACCGGTTGGATGGGCCTAAAATAACACCCATTGGAACTCCACATGATACTACTGTCAAAAGTTGCCTCGTAACTACCAAAGCAACTAATACAATGACAGCACATAGCCAAAACTTCAAAGAACTAAGTTGTGGGATTCAGAATGACGAAAAACGTTTAGGTAAATTGAATTCAAATAAAGAAACTAATACAACACATCAGCGAAACTTCAAAGACCTAAATCCTAGCATTAGTGATTATGAAAAAGGCTTGGGTGAATTGAAATCATCTGGAGAAACTAATATAATGACAACACATAACCAAAACGTTGAGGAACTAAGTCTTAGAATTCAAGATAACGAAAAGCGCTTGAGTAAACTTAACTCAACTAAAGAAGCTAACGTAATAATTCATGACCAAAACTTCAAGGAACTAAGTTCTCAGAAACCTTTAGATGGGTTGAAATCTATTGAAAAAACGAATGTAACACATGACCAAAACTTCAAGGAACTGAGTCCTGAAAAACACTTTGATGAATTGAATTCAACGGTCCCTGCCACACTCCACCACGAGCAACAGAACCGCCGTCTTCTTCACAGAGTTATAGTTGTTGTAGACGACGTTGACATTGTGAAGAAAATTCTATTGGATGCAGGGCTGGATATGATAGAAGTAGTGAAGTCTGGAGGTAGCAGTCGGCACGACAGCATCTACAGTGGTCTGCGGGCCCTACAAGGAGACCAGCCAGACGTAGTGGTGGTGCATGACGGAGCCAGACCACTGGTGCCGCACCAGACGTTGAGACAGGTTGTGGCTGCAGCGCACAGAAGAGGGGCAGCAGGACCAGTGCGCCCCCTGGTGTCCACAGTGGTCAAAAGACAAGAAGACGGCCTCATGTCGGAAAGTCTAACACGATCTTTATACCGCAGCACCGAAACACCACAGGCATTCCACTACGTTATGATACTGCGAGCTTTCCAACAATGTTCAAAGAGCGAGATGCAGCAAGGAACCGAAGTGCTAGCGTTGGCCGTATCGCAGGGCATCTCTCCAATGCTGGTGGATGGAGGGTCAGACCTCTGGAAGGTCACACATCTTGAGGACGTAGAAAAAGCCCGAGCTATTTTAACCAAGAACAGGAGGTTCCTCTCTATTATCTGCCTTCCATGTGACCACTCAGAGAACAGTGCAACGTCTCTGATACCACGGGAACCCGAGAAGAATTCTCTAACATCGCAAATAAAAGAGCATTGGAAAAATAGTGGCAATGGTGGAGAAATTAATTTAGAAACACGTCATGAAACACCTGCCGATAAACAAAATAAGAACATTGACGAAGAGAATGTCAATAAAACGATTTGCAGTATACATCAAGTTGCTTCTAATACACATGGAAAAAACTACAATACATCTCAAAGAATGACATCTGGCTATCTGAGCGAAGGAAATTGTATCGAACCAAACAATAAAAAGCTTAAAATATGTAAAATTGTGGAGAACTCAAATACGAAGCCAGAATCTGACAGTTTACTTCACGAAGAGGATTCGCTGTCCAGCAGGTCAGCGGCGACCAGCAGTGTCGCCAGCGACGACGCCGGTGACATGGATCTCACCCTGGGCAGCCCTGAGCTCATCCGCAGCGCCAGCCTTATTTCTGTGGACTCTGCGGCCTCTGCAGCCTCTGTAGAGGGTGGCGACTGCGACAAGATGGCCCACCTCGCCGCCTTCTTCCAGTTTGACAAGACCCACGCCACCTGCGCCAAGTGTGGCACCAAACTGAAGCTGCAGGAGAAGAGTGTCTTCAACCTCAAGAAGCACTACAAGGCCAAGCACATCAGCTTTGAGGGAGACTTCCTGGCAGCCTTGGCTGGCGGCAGCAAGAGGGGCAGGTCGTACTCTAGCCAGGACAAGCCTGACGCCAAGAGGAGGCAGACCAGCATAGAGGCGGCCTTTAAGACCAACTTCAACCAGAAGGAGGCCCTGGACCTGTACTACAGGTTTTTCATCTCAGACATGCTGCCCACCATCCACACAGACTCTGAGCCGTTCCGCCAGTTCCTGGCGTACATCTGCCCAGAGTTCCAGGTCCCCTCCAGGAGGAAGCTCATGCGTGACATGAAGCGCATGGGGGAGAAGGCCAAGGTCAACCTCAGCGACGTCCTGGCCAAGCAGGACTATGTGGCGACCACTGCTGACAGCTGGTCTTCCCACCACAGATCCTTTCTGGGCATGACAGTGACCTGGCTGGACAAGGAGACGCTGGAGAGGTCCAACGCCGTCCTGGGTGTCAAGGAGCTCAAGGAGGCAAAGACTGGCGAGTTCTTGGCGGACGCCATGTCAGAGCTCCACCAGGAGTTTGGCATCAACAGAAAGGTCGTCACAACAACTACAGACAATGGCGCCAACTACGTCAGCGCCTTCAACCAGTTTGGCGTGGCCGAGGACGATAAGGAGAGGGAGGAGGAGGACCCTGAGCTGGTCAACTCCACGCCCATCCTGGTGGGGGAGGCCCTGGAGGGGACCAACCACGACATCCTCCTGCCCAAGCACCGCCGCTGTGGGGCCCACACGGTGAACTTGCTAGCATCCAAGGACACCGAGAAGGTGCCGGGCTGGACCTCCACCCCCAGGCCAGCCTTCTCCAAGCCTGCTGCCAAGGCCCAGGGCATCTGGAACGCCCAGAACCGGAAGACCGTGACAGCCAACGACATCAAGGCGGCCATGGAGAGGAAGCTGGTGACACCTGGGGTCACCAGGTGGAACTCCAGCTATGACGCCTACAAGTGCCTGTCAACTGAGGTGTCTGACCAAGAGAAGCTCAACAAGCTCAACAAGATCTGCCAGCGGCAGCACCCCCACGCCCTGCCGCTGATCCTGGAGGAGGACAAGGAGGTCTGGTCTGAGTATGTCAAGGTGACAGCTCCCTTGGCTGTCTGCCTTGACAAGCTCCCTTGGCTGTCTGCCTTGACAAGCTCCAAGCAGAGGAGAAGGCTTTCATGGGCTGCCTACTCCCCCAGCTTAGATTGCTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01128	IspD	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR018294	Conserved_site	4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site	Interproscan
IPR029044	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR034683	Family	Cytidylyltransferase IspD/TarI	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43015	D-RIBITOL-5-PHOSPHATE CYTIDYLYLTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0008299	Biological Process	isoprenoid biosynthetic process	Interproscan
GO:0035269	Biological Process	protein O-linked mannosylation	Interproscan
GO:0047349	Molecular Function	D-ribitol-5-phosphate cytidylyltransferase activity	Interproscan
GO:0070567	Molecular Function	cytidylyltransferase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-