Gene detail

Detailed information of Hgig_17501 in Hirondellea gigas Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Hgig_17501	RNA RECOGNITION MOTIF-CONTAINING	Chromosome17	377218469	377481456	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Hgig_17501

GTTACGGCCCCGTGCAGAGCGTCAAGCAACTGAACGGGGCATCTTCTGACGGCTCAGATTCCGCTAACACAAACTCTACCTCCTCTGGTGGTAACAACAACAATTCCAGCACCAACAATAACAATAACACTAATAACAGCGGCGGTAACAACTCCTACACAGTAGCATTCGTTGACATATGTTCAGCTGCAAAAGCTCACAAGGCAGATCACCGCATTGACGATCGTATTCTCAAAACCACTTACTATGAACCCTCTGTCACTTCGCTCACGTCCGGAGGACATTACTCTGTGGTCTCATCGTCTTCGGTGTCGTCGCAGCAACAGCAGGGATGTTCTTCTTCGTCAGGCGGCGGTGGTGGTGGTGGAGGAGGAGGGGTTAACTCCGGGAATGGTAGTGCCTCTGGAGGAGGAGGAGGAGGAGGAGGGATCAGTCATTATCCTTCAGGACCTCAGAGCTCTGTGCAGGGGTCATTAGGAGCCAGGAGTCCGAGATATGCCACAGGATTAAACGATGATCACATGAGCTACGATCGTTCTAGTCATTTCTACGAGAGCGGGCGACGTGATGATGTGGGATCCTACAACGGCCCCGTCGGTATGGGTGTTGGGGGCGGTGGCATGCGACGTAACTATCCTCCACCACCCGATGCTGGGGACTTCGGTGGCGTTGTTGGTAGAGGCGGCAGACTTAGGCCCTACCCTCGGGTGCAGTACGGTGCTTCGAGCCGGTGTGATCCCCTCGAGTATCGATGGCAGAACTCTGCTCCACCGCCTCCTGCAAATTACAGATACCACAATTCAGAATCGTACGGGGACGAAAAGGTCCCATGCTCGGTGAGACGTGGGTCGATGCCGCCATCCCCCACACAGGTGGTCCGAAGCAACCCTGGTCCTGGCGATACTCCGTCGTCCAGCCGAAGCAGTAGTACGAGCAGCACAAGTAGCTCGTCTAGTTCTAGTTCCAGCAGATCGCGATCATATTCTAGATCAACGTCCAGATCACCTCCTCCTCCTAGATTACATTCTTCTATGCTGTCTAATTCTACGAATAATATTGATAAAAGACCTCTAGCAATATGTGTGCGAAATCTTCCCATAGGTTCAACAGACATTTCTTTGAAGGACGGTCTGTTTCACGACTACAAGAAACACGGCAAAGTAACAACTGTGAGAATTGTTGGCTCTGGCACGGAACGTTACGCCGTGGTGTGCTTCAAGAAACCGGAGGATGCTGAGAAGGCACTCGAGGCGTCGCATGACAAGAGATTTTTCGGCGTCAAAATACAGGTGGCTCCCCACGAAGGACTGGAGTTGGATGAAAGCGAGTACCGCACATATGATGTCGACCAAGATGAGTATCACCACAAAGCCACGCGTACCCTCTTCATCGGGAACTTGGAGAAAGAGATCACCCCGGCTACACTCAGAGAAACATTCGGCAAATTTGGAGAGATAATTGAGGTGGAGATCAAGAAACAGAACCTCGCCACATTCGCGTTCTGCCAGTACGCTGATATCCGCAGTGTGGTGCGCGCGATGCGCCAGATGGACGGAGAACACCTTGGAAGCAACCGCATCAAACTCGGCTTCGGCAAGTGTATGCAATCTCGCTGTGTCTGGCTCGATGGTGTGGCTGATGCTGTCACGGAACCCTGTCTGCAGGACCAGTTCTCCGTCTATGGCAATGTTCAGTTCCTCATCATTGACAGGAAGAGGGGACAAGCGCTTATTTTTTACGAAGGGGAAAAATTCGCCTCAAACGCCGTGAGTGAGATGCGCGGTCGTATGCTGCTTGGTAAGAAGCTGCAGATTGACTTTGCTTCTCGCGAGTGTGAGGCTGCTTTCTTCGATCACCTGGAGAAACAAGGCTATCACCTGCCAACTGACAGGCCCTGGGAGAGAAACTCATCAAAGTAAGTGTTCGCCCTACTCTAACCAGTTTTTGTTGGGCCCATAAGGGTAACTAATCTTTTATGATTTTACTATAGCGAGATGACTGACAAAGG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF13893	RRM_5	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR034173	Domain	SHARP, RNA recognition motif 2	Interproscan
IPR034174	Domain	SHARP, RNA recognition motif 3	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23189	RNA RECOGNITION MOTIF-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-