Gene detail

Detailed information of Hgig_18165 in Hirondellea gigas Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Hgig_18165	ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE LYASE	Chromosome19	31976423	32104535	+

Gene Structure

More details in Jbrowse Sequence

CDS

Hgig_18165

ATGAGTAGTCTCCCCAAGAACATAAAAGCGATGATTCTCATGCAGGGAACCAAAACGTTGGACAAGGTGGCAGAGTTGGCCGACAGAGTATTGGTGGACATGCCTGAGTTTTACGAAGACTCGCTGGCAACCGTGGAAAGGGTCGATAGCATAAACACCATCGCTCGAGTTTCAAATTTTGAAACTCTGAGGATGAACAACCTCACGGATGAGATAAATGAGCTCAAAGTTCACTGCAAAACTGACGAACGCAATAGGTCAGGCTTCGAGAAATTGGCAGAGAATAATGCTAGGGATATAGCGAAGCTGACACGTGAAATGGCGCGACTAAGCCAAACTGTGGAGCAGGGATTCGAAAATATCAAGAAGGCCAACAACAAGTTCCTGCACCGTGGACCCAACCCCCGAGACAGAAGGCACCCCAGACAAGCTGGAGGAATCAAACCGCACCTCGTGTTGCATCGGCACCTCAGTGGAACGGACCGAGTGGAACGGGAGACCAGTCCTTGTGTTTTGTATACAGGAGATATGGCTCGCAGGCTCGTACTTGAAGGCAAACTAAGGGAGACCACATACCTGATAGACACTGGAGCATCTGTCAGCGTAGTGTTGCCTCAGCCTCAAGATCTAAAGAATTACGAGCCCGACACTATACTTAGAGCAGCTAATGGAACCAGAATTAAGACGTACGGAACTAAATTAGCCACCGTGGAGTTGGGCCTTAGAAGGAAGATGCAGTGGGTCTTCATCATAGCGGACGTCACACAGCCAATCATCGGCGTGGATTTCTTAGCACATTTCGGTTTGAGTGTTAATTTGCGCCACCGAAGGTTGGAGGACCCTAGTTCCGGACTTTCATCGCCAGCCAGGATCATTAGAGCATCAGTAGCGATAGGCAGTATTACTGATTGCAAGGCAGTATACGCCCAGATTGTGAGGAAATACAGGCTCACGGAGGCAATGCAAGAAGGAAGGAGTAAGGACACAGTTAAACACGACGTGAAGCATGACATAATGACATGGGGATCGCCGGTGTTCGTCAGACCAAGGAGATTGGGACCCAACGTGATAGGGCCTGCCAAGGAAGCGATTATGAAGATGTTACAGGATGGAACAATTCGTCCCAGTAAGAGCCCTTGGGCGTCACCCCTACACATTGTGCCCAAGAAGAGTGGAGATTGGAGACCAGTGGGGGATTACAGGTTGCTGAACAGCAGAACGCAGAGAGATTCGTACCCGCTACCCCACCTGCAAGACTTTTCCGCTGAACTGGCAGGAAAGACAGTTTTTACTAAAATAGATCTGAAAAGTGCATACTTTCAGATTCCGGTGGCAACGTTAGACATACCGAAGACGGCCATAACAACTCCTTTTGGCTCATTTGAATTCCTAAGGATGCCCTTCGGACTGGCAAGCGCTAGCCAGACCTTCCAGAGATTCTTAGATACAGTACTGAGAGAGCTTCGCACCTACAACGATGGACGACCCGGCATCACACTTTTCAACTACATCGACGACATTCTCATAGCCTCAGAGACGGAGGAACAGCACATCTATGACTTGGACAGAGTGTGCGCTCAGCTAGATAAATATGGCCTAATTATAAGGAAACACAGCAAACACGCCCTAATCAAGTGGACGGAAGAGGCAAGGACGTCATTTGAGCGTGTGAAGGAGGCCTTGGCAGATGCAACGCTCTTGCACTATCCAGAAAGAGGCGCAGAAACATCTATCACGGTGGACGCATCCGACACAGCAGTGGGAGAAGTACTTCAGCAACGTCGAGAAGGAGAATGGAGGCCCATCGCCTTCTTTAGCAAGAAACTCCAACCACGAGAGAAGAAATTCAGTACCTTCGGAAGAGAGCTTTTGGCTGCATTCCTGGCGTTGAGACATTTTCGATACTTCATCGAAGGTACTCAGTTCCACATCCTCACCGACCACAAACCGTTGGTGGGTGCCATCAACAAAGCAAGTGAGCGTGACATAGCTCGTGAATCCAGACAGCTATCACTTATCAGCCAGTACACCACCGATATAAGGCACTTGCCTGGCATCGATAACGTCGTGGCTGATACCTTATCTCGACCAGAACCCCAAGAGGAGGAGGAACAGACCAACGCACGACCAGAATCCCAACAAGAGGAAGAACACTCCATCGCAGCAATATTCCAGGATTGCGAGGAGGACACCTTGATAGAGGAACAGAACCAGGATCAACAGCTGAAGGCATTGATTGCCAACCCTTCAGATCAAATACCGCTAGTTGAAGTAGGAAAACTTTTTGCACATATTGTAAATGGCATAGCGAGACCGTACATCCCAGTGGGGCTGCGCAGAATTTACTTTGATAGAGTACATGACTTGGCTCATTCCGGCACTAGAGCCACCACGAAACTGATGAGCGCCCGTTATGTGTGGCCATCGCTTAAGAAGGACGTCACTAGGTGGTGTGATGAGTGCAATACATGCAAGAGGGCCAAGGTAACTCGACACAACTTCACCAGGCCTGACACTATTCCAACAGTAGGAGGCAAGTTCGACCAGGTTCACATTGACCTAGTCGGACCACTACCTGAGAATAATGGATATCGTTACATACTGACTTGCGTGGACCGCTACTCTCGATGGCCTGAAGCCACACCTATTGTAGATATGACAGCAGAAACAGTAGCCAAGGCTTTTATTAACGTGTGGATTGCTCGATTTGGAATACCTACTTCAGTAACGACAGATCGAGGTCCTCAGTTCCAATCGGAGCTGTGGTCCAGTTTAATGAACTTGCTGGGATCAGTGAAGATAAGTACTACGGCGTACAACCCAAGGGCCAACGGAATAGTGGAACGTTTCCACAGGAGGTTGAAAGATGCAATAAAGAGTCAAGTGGACAGACACTACTGGGTGGAGAAGCTGCCATTGATTCTGCTGAGTATAAGGACCGCGGTTAAGGAAGACCTCGGACTCAGTTCCGCAGAATTAATGTACGGCAATAACCTACGGCTGCTCAGCGACCTGCTGGTTGTAAACACAAACCCGACCCTTTTGGATATGACACGTTACAATGATCGCCTGAAGCTCTTCATGAATTCCGTGGGACCGGCGAGCTCCAGAGTACAGGAAAGTGGTAGACACTATATAGACGCCAAACTCAGGACGGCAACTCACGTCTTCATCAGGACAGACGCAGTGAAGGGACCCCTTCAGCAACCCTACAGGGGACCCTATAAAGTACTGGCCCGGGCAGAGAAATACTACACAGTGCAGCTAGAGCGAAAAACAGATACGGTCAACATAAAACGATTGAAGGCAGCTCATGGCGACAGCGACGCGGTAACGCCGGCTGCGCCTGAGGTTGTAGTGGAGCAACAATACCGCTCAACAACACCAGCCGTGTCCAACAGACCGTCAGCCAGTGCCTCGGCCACCAGGAAGCCTACGTCGCGCCATCGGAGCCAGGACGTCAGGAATCTACCAGGCGACATCTCACCACCAAAGGAGCAGCAGCACATCACGTCGAGACGGGGGCGTCGTATACGACCACCCGGAAGATTTAAGGATTTCGTGAACGTCGACCCTGAGGAGCTGAACTGTTTCCAATATTACCAGAATCAAGACGATTGGACAGGAAACCTAGGTTGGGTTAACCTGGCCGATATGTACAGTAGACATTCAGCCATAAATTCCTCACCTGGCTGCCATCTTACTCTCTGCACACGGTCTTCCAGCACTGCAATGGTTGATTCATCAGAGAAGACGACCTGCAACAGTAGAAAATATAACAGTAGTAGTGGAACAGCCAGAGAAGTAATGAAACACCAAAATAAATCTGAGGGTGTACGCAAGGAGAAGGACACATTCGGTGAGCTGGATGTGCCCAACAGCCGCTATTATGGAGCACAGACTGTACGCTCCACTCTTAATTTCCCCATTGGAGGAGAAACAGAGAAAATGCCAAGACCACTTATCATGGCGTTCGGTATCCTGAAGAAGGCTGCAGCGGAGGTGAACAAGGAGTTTGGTCTGGACCCGAAGGTTGCTGATGCTATTTCTAAGGCTGCTGATGAGGTGATCAGCGGCAAGCTCTACGATGAAGGACATTTCCCCCTCGTCATTTGGCAGACGGGTTCAGGTACGCAGTCCAATATGAACACTAACGAAGTGATTGCTAACCGAGCCATCGAGATAATGGGTGGTGTGTTGGGCTCCAAAACACCAGTGCACCCCAACGATCACGTCAACAAGAGCCAGAGTTCTAACGACACGTACCCGACAGCAATGCACATCGCCGTGGCTGTGGAGCTCCACCAGACGCTGCTTCCCGGGCTCACGAGGCTCAGGGACGCGCTGCACGACAAGGCGACCGAGTTCGAGAGCATCATTAAAATCGGCCGCACACACACACAGGACGCGACGCCTCTCACCCTGGGCCAGGAATTCAGTGGTTACGTACAGCAGCTCGAGTTCGGTGTGCAGCGCGTGCAGGCCACACTGCCCCGCGTCTACATGCTGGCTGCGGGGGGTACGGCTGTAGGCACGGGACTCAACACGAGGATTGGATTTGCTGAGAAAATCGCCGCTAAGGTACAGATCTCGCACCCAGCACAATCGCCACAGCTCGATGACTGGTCAGATGGCGGGAGCAGCGTCACTTAA

Transcript

Hgig_18165

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00206	Lyase_1	Lyase	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan
PF17919	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000362	Family	Fumarate lyase family	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR001995	Domain	Peptidase A2A, retrovirus, catalytic	Interproscan
IPR005677	Family	Fumarate hydratase, class II	Interproscan
IPR008948	Homologous_superfamily	L-Aspartase-like	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR022761	Domain	Fumarate lyase, N-terminal	Interproscan
IPR024083	Homologous_superfamily	Fumarase/histidase, N-terminal	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR041577	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11444	ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE LYASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0004190	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0004333	Molecular Function	fumarate hydratase activity	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006099	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0006106	Biological Process	fumarate metabolic process	Interproscan
GO:0006108	Biological Process	malate metabolic process	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-