Gene detail

Detailed information of Hgig_18427 in Hirondellea gigas Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Hgig_18427	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Chromosome19	140599645	140804637	+

Gene Structure

More details in Jbrowse Sequence

CDS

Hgig_18427

ATGAAGATCTGGGAGAGAGTGCTGAACGAGAGGCTGAAGAAGGTATGTATCATAGATGATCGTCAGTTCGGGTTCATGCCTGGAAGATCGATCACTGATGCTATATTCATAGTGAGACAGCTGCAGGAGAAGTATGGAGAGAAGAAGAAACGGCTGTATCATGTATTTGTTGACCTAGAGAAGGCTTTTGACAAGTTTCCACGGAATGCAATAAGGTGGGCTCTAAGGAGACGGAATGTTCCAGAAAGAAACTTGAACAGAGTGGTAAACTTCAGCTGTCCTGCATGTGACAGAAGGAGAACAGAGGATATGGTGGTGGTTGAGGAAGAGACTCTGGAGGTGGAGGGAGGTGTAATCGAGGAAGTGAAGCAGTTCTGTTTTCTCGGAGATATGTTGGACAGTGAGGGCGGAGTTGAGAGATCAGTTAGAACAAGAGTCGCAGCAGCGTGGAAGAAGTGGAGAGATATAGCTGGTTTGTTAATAAATAAAGGTATTCCACTCGGGTACAGGGGCAAGGTTTATGAGGCATGTATAAGATCGGTGTTGTTATATGGAGTGGAGACATGGGCCTTAACAAAGAAGTTGGAGGATGTTCCGATTGATTGTGATAGGAGAATGTTAAGATACTTGGCTGGCATCACCTGGAGAGATAGTGTCAAGTGTGGATGTGGCACGGAGGGGAACGAGGTGGCCAAGCTATTGGTCCATCACGTCCAATCCACCGGTTCGAAAATGTTTGGTCTAGAAACTCGCGAACTACGAGACCCCAATGAGGCGGTGCACCATCCTGCTGGAAAAGAACTAATGGCTGATACTCCTCTAGCTGTGGCACAACATATGCTCGCAAAACATCGAGAGCGGAGTGTGTACTGCCCGTTTAACTTTGAAGGACCAACCATTACTGGGCAAACTTACCTGGAAATGATAACGAACTGGTTGATTCCAAGACTAGCTGTTGAGGGTGGTGACTACCTTTTTCAGCAGGATGGCGCACCGCCGTACTGGTCTCTCGCTGTCCGCAGATTTCTCAACATGCACCTGCCATACAGATGGATTGGCCGTGCTGGACCGCATGACCAGGTGTTCTGCAAGTGGCGCCCGATATCACCAGACCTAACTGTCTCGAAGACCGACTCAGTTCATCAGTTGTCCGAGGCCTGTACACTGAAGGATCTACTTCGCTATGACGACATCGATGCCGATGGCCATCTCAACCTCAACGAGTTCTACACAGCCTTCAGTGTGTCTGTGGTGTCCTTGGACAAGGCTTTGGAAGTTAACGAAGTTTCGTCGCGTGTGGGTGACAACTTGGAGATCAAGTGTGACGTCACTGGCACTCCTACGCCGCCCATAGTGTGGAGGAGAAATGGTCTCGACCTCGCCGCGCTAAACTCGGAGGATATCCGCGTGTTCATGGACGGCTCTCTCTACCTGACGCGGCTACAGCTGGTGCACGCTGGCAACTACACGTGTCACGCAGACAGGAACAGCGACGTCGTGCAGACACACGTGCTGCACGTGCACACTGTGCCCCGGGTGCGAGTTACTCCCCACATCCAGGACCTGCGGCCTGGGGAAGATGCTCACATGAGTTGCCGGGCCACTGGAGAACCCTTCCCCAAGGTTGAATGGCTGAAGAACGACGAGCCCCTGCGAGTGGACATCCCCCACAAGTACGAGGTGCTGGGTAACGGCTCGCAGCTACGGGTACGCAACATAGGCTTTGCCGATACAGGGGCCTACATGTGCCAGGCCAGCAGTGTTGGTGGCGTGGCCAGGGACATCAGCTCTTTGGTCGTGCAAGACAACCCCATGCAACGAGAACAGAGCCAAAGGACCAGGTTCCTGGTGTTCCATGACATGGGCCTGGCCGTGTACGAGCCCGACACTTGCCGACTCCTGCACGTCATACAGGGCACCGATGTCATCCCTGGTACACAGGAGTACGTGTGCGGGGATAAAGGTACGCGTTGTTCTTGGGGTCGGTCGGTGAACGTGGCTGAGCGCTACGTGTACGCCTCGCAGCCTGCACGTGACAGGGTCCTCGTCATCTCCGTTGAGCAGATGGTCGTAGTCGACGTGATCGTGACGGACCAGTACCCGGTACAACTTTGGTACGTCGGCAACCTGGACCAGGTATGGGTACTGAACTGGCGGGCCACCAACGACGAGGGCATCAAAACTATACAGGTGATCAGGTACGCGTCTCAGAAGAAGAAGCACCACACTGTCCACCCTGAACCAATCGACGGACACTTCGATCTGGTCAAGGATCTCTTCGTGCCTCCAGCTCAGGACTTGGGTCACGAATTCCGCTACGCATATGTGACACACACCAACCAGCGGGGTCTGTACAAGCTCGACCTTGCCAACATGAAGTACGTGAAGACTGTGGACCTAACTCCGTACAACTGCGTGCCACAAGGGCTCGTCTACTCCTCCCTTTATGGGCTCGTGATCGTGGACTGTGCGGAACCAGTGACCGGTCGTCGCACTGGCCAGCTGGTGCTGGACTACCTCACTGACGCTGTGGTGGGTGTAAAGCCGTCGCTGGTCGGCCACCCTTACGTCACTCCAGACTCCCAACTCGTGGTCACCGTCGACACGCTCGCTAGAGTAAAGATCGTCGTCCAGAGAGTCACAGAGCACGGGCTGGTCTACTTGTACGACGTGAGCACGACACTAAATGTGTCCGATGTGGCATTCTTCCCCTCGCGCCTCAGCCACAGCTACGATCTCTACGCTGCCAGCACTGACAAGGACGACATACTCTCCCTCGACCTCCACACTGGCAAAGTGGAACTCATCACTGGCGTCGGCCACGCTATGGCCAGCACCCTGGCAGAATGGGGCAACACGAATCGCGCCATCAGTTCGTCAGGAGTGTTCGGCCATTACATGGTCTCCCCAGCTGAGGGCGCTATCTTCGTCATGAATGGGGACACCAGGACAGTCAACTGCGAGATTGGGTCTCTGGTCCACCCGCGCTTCTCCCTCTGGGTCGCGAGACCTGAAGTCTAA

Transcript

Hgig_18427

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46238	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-