Gene detail

Detailed information of Hgig_21553 in Hirondellea gigas Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Hgig_21553	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	Chromosome23	100622793	100635506	-

Gene Structure

More details in Jbrowse Sequence

CDS

Hgig_21553

ATGTCGGTTGGTAGCCCAACTCCGTCTTTGGAGTCTTTCTCTGGCACGCCCATCGGCTCCCTCATAGACTCGGATCCTACGAGGTCGTTGGAGAACTCCCCACCAGTCTCCACCACCAGTGGGTATTCTAGTCCAAATGAGATTTGTATTAGTTCCGTTACAGGACACACAGGCCCAGTGAACACCATCTGTCCATGCTGCAATGACACGTTCGTCCAGCCAAGGACTCTGCAGTGCCTGCACGCGATATGCTTCGGCTGCGCTGAGAAGCTATGTGATGTGAACAGAATTCAATGTCCTACATGCCATCAAATAACTGAGCAACATCCTAGCATCCTCGTCCCTGACTATGCTCTTCTCCGCTTGCTAGAGTCTGCGTTGGATGAACCATCGTCTTGCACTGCCTGTAAAAGCAGGGACATTGCTGCAATTGCGCGTTGTTTGGAATGCACTAAACTGTTGTGCAACAATTGCGTGATGGCGCACGAATACATGCACTGCTTTCAGACCCATAGAGTCCTTACTCTTTCGGAGCTTGCTCAAAGGGACGAAAGGCCAGTAGTTTGCATAAAACACAAGGAACCGATCAGGTACATTTGCACAACTTGTGATGTACCAATTTGTCAAGATTGCTCCATTGTTGAACATCCTGCTCCATTGCACGCTCACGCTGGTCTTGTTGAAAGCACCCAACCCAACTTGGACTCCTTTAACCAGTGTCTCGAGGCTTCAAGAATTAAGGCACAAGATCTGAGAGCTTGCATAAAAAGTGTTGAGAATACTAGTGCACGGATGCAGATCCAGTATGATAAAGCACGACTGGACATAAACAACAGTTACACACAACACGTCACCCTATTGGGCGAGAGGCGTGCAGAATTGTTCAAGGAACTTGAGCATCTCTACTCAACTAGGCAAATGAATCTGTCGCAACTGGCGCGAAATGCGCAGGATAGTGTTGATACTATCTTCACTGCTTGTGATTTTGTAGACAAACAGAGGAAGTATGCAAATACAACCGAACTGCTGATGCATAAAAAACCCATCCAGAAAAAATTGATTGAACAAATGTCGAAGAACTTGGATGTTGGCATGCAAAATGTTAGCGACCTAGAGTTCATCACAAATCACGCTGCGAGTCAAGCTGCCATTCGCAGCACCTTCGGCTACATTAGATCTGCACCGGACCATCAAGGACCAACAAAGATGGCTCCCATTGCCAGGCCAAACTCCTCTGTATCTACCATGAACAATTTAAACAGTTGCCTCAATGGCATAAACGGTCTCTCAATCTCAAACAGCCTTGGTCTGTCTAACGGTCAAATGCCAACGGCTGTGCAGCAACACCAACTTACCAATCTTGCAACCCAATTGGGCAATCTTCAACAGCAGCAACAACAGCAGCATCAACATCAACATCATCAAAATCAGCAACAGAACACTTTCTCAAACAATGGTTACAACGCCGGTTTAGCAACGGCTCTGTCTGCTCTTGGTTCTCAAGGGCTTGGCGCGAGTTCAATGGCAAGTATTATGGATCGAGGTGGCTACACCAATGCTCAACTGACTAGCTACCTCGCCAAAAAGTACAATGCACACAATCTTGGAAACCTTGCTGGACATGGCGCTGCTTCGGTACAAGAATTAAATTTGAACACCGCTGGGTATGAAAAGTGGAGTTCTGGTGGCGATAGCGGTTTCTTCAATTACGCCAGCTTCCCACCGCGTTCTCAAATAAAGAGGCAGAAAATGATTTATCATTGCAAGTTCGGCGAGTTTGGAGTCTTGGAAGGCCAATTTACTGAACCAAGCGGTGTTGCTGTGAATGCTCAGAATGATATAATTGTCGCAGATACGAATAACCATCGTATTCAGATTTTTGACAAGGAAGGACGTTTCAAGTTCCAATTCGGAGAGTGCGGCAAGAGAGATGGCCAGCTGTTGTATCCTAACAGAGTGGCGGTCGTCAGAACTAGTGGCGATATCATAGTCACAGAGAGGTCGCCAACTCACCAGATACAGATTTATAACCAGTATGGACAATTTGTGCGGAAGTTTGGTGCCAACACGTTGTGCTACCCTCGTGGTGTAACTGTAGATAACAAGGGACGGATCATAGTTGTAGAGTGCAAGGTGATGAGGGTAATCATCTTCGATCAGTATGGAACCGTATTGCACCAGTTCAACTGCCCTAGTCATCTGGAGTTCCCGAATGGCGTTGTGGTGAATGACAAGCAGGAGATCTTCATCTCTGATAATAGAGCTCATTGCGTAAAGGTGTTCAGTTATGAGGGTCAGTACCTGCGCCAGATTGGAGGAGAAGGTATCACCAACTACCCCATCGGCGTTGGAATAACTACGCAAGGAGAAATCCTAATCGCTGATAATCACAACAACTTCAACCTGACGTTGTTTACGCAGGACGGAACGCTAGTTTCAGCGTACGAGTCTAAGGTGAAGCACGCCCAGTGCTTCGATGTTGCGCTTATGGATGATGGATCTGTAGTGTTGGCCTCGAAGGATTATAGGCTGTATGTTTACCGTTACCTTCAGGTGCCTCCTCATATC

Transcript

Hgig_21553

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan
PF01436	NHL	NHL repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR001258	Repeat	NHL repeat	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR050952	Family	Tripartite Motif and NHL Repeat Containing E3 Ligases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24104	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003730	Molecular Function	mRNA 3'-UTR binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0017148	Biological Process	negative regulation of translation	Interproscan
GO:0030371	Molecular Function	translation repressor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-