Gene detail

Detailed information of Hgig_24273 in Hirondellea gigas Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Hgig_24273	RNA LARIAT DEBRANCHING ENZYME	Chromosome26	233128941	233196740	-

Gene Structure

More details in Jbrowse Sequence

CDS

Hgig_24273

ATGAAGATGCATTCATTTTATAAGTATTACAGCGGTGAGAAGAAGGCTCCAGTACTTACGATCTTTATTGGGGGCAACCACGAAGCCAGCAACTACCTTCAAGAACTGCCATATGGTGGCTGGGTCGCTCCAAACATTTACTATCTTGGCTATGGAGGAGTCGTCAATGTAGGAGGTCTAAGAATAGGAGGTATATCTGGTATATACAAGGGACCTGACTACCTTAAAGGCAGATACGAAAGGCCTCCGTACACTGATTCCAGCATCAGAAGTGTGTATCATGTGAGGAACCTGGAAGTTTTCCGCATGAAACAGTTGGATCAATGTGCTCCTTTTGATATATTCTTGTCGCATGACTGGCCACGAGATGTTACAAAATATGGTGATGCTGAGGGCCTGTGCAGGCAGAAACAGTTCTTCAGAGACGAGATAGAGTCTGGTACACTTGGATCTAGAGCTGCTCAAGAGCTGTTGCATTTTATGAAACCGCGGTACTGGTTCGCGGGTCACTTGCATGTTAAGTTTCCTGCTATTGTTATCCATAATGAAGAATCAGAGAAGTGTTCATCTACCACTGAGAAGAAACAAGAAAATTCTAAAGATGAATCTACTGTGAGTGAAGAAAATAAACAGAGGCCCAAAAATGAACAATTTACTAGGTTTCTTGCATTGGACAAGTGTCTACCAAGACGCGAATTTCTACAAATTTTAGAAGTGAAGTCTGGAAGGAGACATAAATATCAAAATGTATCTTCAAGTAGTGTTTCTTCCAACAACACAGTTACTGGAACACCGTTATCTTACGAAATGCACGACGAAGATGACAATATTATCCTATACCACGACTTAGAGTGGTTGACAGTGTTACGTCTCACGAATCATTTACTCAAAGTCACAGCGAATGCTGTTTACATGCCAGGTCCAGGCGGATCAGAACCGTATCAGTTTACACCAACGGAAGCTCAGTTAATGGAAACCCTACACATGATGAATAACAACCTAGTCATTGGCAAAGACAAATTTTCTGAGATTGCTCCAGCCTATGATCCTGTAAACGATGCCTTTGCTCTCGATAACATAGATACCTTGCACCAGCCTGATCCCCTGTTTAATCCTTATACCGTAGAACTGTGTGAGGCCCTCAATATCGATGATCCTATTGCTGTACTGCTAGGGTTGAGCAACAATAATGGTGACAAGAGCAAGAGCTTGTTTCTGATCACTCCTAAAAGAAAACCTAGTCAGGCCGAGATGAACGTCACTCTGGATCCTTCGAAAGTGAACAGTCAGGATGAGGCACCGGTGAGTGACGACGACTCTGCAGACATTATGTTTGAAGTTACCATCAACAGCAGCTTAGACGGTAGCAGCCACGGTACTCTCAGCCCTATTGCTACTCCTCTCAGATCTGGCCGTGCTAGAAAGTCCCTGAAACTGAGCACTCCTCGGAACTCAGGTTTAGAAACGCAAGAAAGTTCCCCCATCCCGTCTGCAATTGTACAAGATTTTGACTCTCCGTTGTCCTCCTCCTCCTCTGAGCACAAAACAGATGCCTCTGATCAAAGTTCAGGGAAATCTGTCCCATCGTCAAGTTCTGACAGAGACAGGTCGCTTGAGAACGTTGCTAGGACAAACGACTGCATAGACGAGGACCCTGCACCGAATGACGAAAGTTCGTTTATGACTGACGACTGTGCACAGGAAGACCCCGCCCCAAACAACGAAGCGTGTAGCTCTACCTCCTTGTCACAGTCCAGTAACTCTGATGAGCAATGTTCGCTGCAACAGTTTCCCAGTTCTTCTGAGAGTAGCAGTAGTGCTGCTTCTGTATCTGCTAATAATAGCAGCAATAATAGTAGTGATAATAAACTAGGTTCGGCCACTGAAAATGGCTCAAGTCCTAAACGCCTGTTTTGTTCGGACAAAGAGAAACCGCAGGAAACGCCCGTCAATGTGAAAGAAAATCCAACGGCGGGTCTCATTCCCAAACCTTCCAAGATCAAAAGAAGAAACGCTGCTGTGTATGCCAATGTCGACGATTAG

Transcript

Hgig_24273

TTTACAGATTATTGAATGGTAGCTAATAGTTAATACTAATAAAAACTACTGAAAGCATCTAGCAGAAATATATTAGGTACCTAACACCATAACAATTTCAAAATATCTAACACTCAGTTCTATTTGTAATTTAAATATAGAAAAGAAGACCACAACAAGTGTAGCTTTATTAAAAATTTAGCTAGTAACACCCTGAAAGTAAGACAATCATCATGCATCTGGCAATCGAAGGCTGCAGTCACGGAGAGTTGGATGTGATCTACGCGGCGGTTGTGAAAGCACAGGAGATGTCTGGCTTCAAAATCGATGTGCTCATTTGCTGTGGAGATTTTCAGTCAGTTCGCAACCCTAAAGACCCTTCGGTGCATGGCCGTGCCTACAAAAGTATATGAAGATGCATTCATTTTATAAGTATTACAGCGGTGAGAAGAAGGCTCCAGTACTTACGATCTTTATTGGGGGCAACCACGAAGCCAGCAACTACCTTCAAGAACTGCCATATGGTGGCTGGGTCGCTCCAAACATTTACTATCTTGGCTATGGAGGAGTCGTCAATGTAGGAGGTCTAAGAATAGGAGGTATATCTGGTATATACAAGGGACCTGACTACCTTAAAGGCAGATACGAAAGGCCTCCGTACACTGATTCCAGCATCAGAAGTGTGTATCATGTGAGGAACCTGGAAGTTTTCCGCATGAAACAGTTGGATCAATGTGCTCCTTTTGATATATTCTTGTCGCATGACTGGCCACGAGATGTTACAAAATATGGTGATGCTGAGGGCCTGTGCAGGCAGAAACAGTTCTTCAGAGACGAGATAGAGTCTGGTACACTTGGATCTAGAGCTGCTCAAGAGCTGTTGCATTTTATGAAACCGCGGTACTGGTTCGCGGGTCACTTGCATGTTAAGTTTCCTGCTATTGTTATCCATAATGAAGAATCAGAGAAGTGTTCATCTACCACTGAGAAGAAACAAGAAAATTCTAAAGATGAATCTACTGTGAGTGAAGAAAATAAACAGAGGCCCAAAAATGAACAATTTACTAGGTTTCTTGCATTGGACAAGTGTCTACCAAGACGCGAATTTCTACAAATTTTAGAAGTGAAGTCTGGAAGGAGACATAAATATCAAAATGTATCTTCAAGTAGTGTTTCTTCCAACAACACAGTTACTGGAACACCGTTATCTTACGAAATGCACGACGAAGATGACAATATTATCCTATACCACGACTTAGAGTGGTTGACAGTGTTACGTCTCACGAATCATTTACTCAAAGTCACAGCGAATGCTGTTTACATGCCAGGTCCAGGCGGATCAGAACCGTATCAGTTTACACCAACGGAAGCTCAGTTAATGGAAACCCTACACATGATGAATAACAACCTAGTCATTGGCAAAGACAAATTTTCTGAGATTGCTCCAGCCTATGATCCTGTAAACGATGCCTTTGCTCTCGATAACATAGATACCTTGCACCAGCCTGATCCCCTGTTTAATCCTTATACCGTAGAACTGTGTGAGGCCCTCAATATCGATGATCCTATTGCTGTACTGCTAGGGTTGAGCAACAATAATGGTGACAAGAGCAAGAGCTTGTTTCTGATCACTCCTAAAAGAAAACCTAGTCAGGCCGAGATGAACGTCACTCTGGATCCTTCGAAAGTGAACAGTCAGGATGAGGCACCGGTGAGTGACGACGACTCTGCAGACATTATGTTTGAAGTTACCATCAACAGCAGCTTAGACGGTAGCAGCCACGGTACTCTCAGCCCTATTGCTACTCCTCTCAGATCTGGCCGTGCTAGAAAGTCCCTGAAACTGAGCACTCCTCGGAACTCAGGTTTAGAAACGCAAGAAAGTTCCCCCATCCCGTCTGCAATTGTACAAGATTTTGACTCTCCGTTGTCCTCCTCCTCCTCTGAGCACAAAACAGATGCCTCTGATCAAAGTTCAGGGAAATCTGTCCCATCGTCAAGTTCTGACAGAGACAGGTCGCTTGAGAACGTTGCTAGGACAAACGACTGCATAGACGAGGACCCTGCACCGAATGACGAAAGTTCGTTTATGACTGACGACTGTGCACAGGAAGACCCCGCCCCAAACAACGAAGCGTGTAGCTCTACCTCCTTGTCACAGTCCAGTAACTCTGATGAGCAATGTTCGCTGCAACAGTTTCCCAGTTCTTCTGAGAGTAGCAGTAGTGCTGCTTCTGTATCTGCTAATAATAGCAGCAATAATAGTAGTGATAATAAACTAGGTTCGGCCACTGAAAATGGCTCAAGTCCTAAACGCCTGTTTTGTTCGGACAAAGAGAAACCGCAGGAAACGCCCGTCAATGTGAAAGAAAATCCAACGGCGGGTCTCATTCCCAAACCTTCCAAGATCAAAAGAAGAAACGCTGCTGTGTATGCCAATGTCGACGATTAGAGCAAGTAAATATTGCCATGATGTCGTGTAAATGATCCTATTCACGGCCGAGCATAGTAACATGCGGTCGAGATGACCTTGTCGTATTGCCATGATGTCGTGTAAATGATCCTATTCACGGCCGAGCATAGTAACATGCGGTCG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05011	DBR1	Lariat debranching enzyme, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007708	Domain	Lariat debranching enzyme, C-terminal	Interproscan
IPR029052	Homologous_superfamily	Metallo-dependent phosphatase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12849	RNA LARIAT DEBRANCHING ENZYME	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006397	Biological Process	mRNA processing	Interproscan
GO:0008419	Molecular Function	RNA lariat debranching enzyme activity	Interproscan
GO:0016788	Molecular Function	hydrolase activity, acting on ester bonds	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-