Gene detail

Detailed information of KAG7262823.1 in Coryphaenoides rupestris Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAG7262823.1	DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL	PIJE02001237.1	82079	99704	-

Gene Structure

More details in Jbrowse Sequence

CDS

KAG7262823.1

ATGAATCCTGCCCGGGGACCCCCCTCCTCTGCCGCTGCTGCTGCCGCCTCGGAGGAGGAGACGTCTTGTCCAGAGCCGGAGGACCGGAGGAGCACGGCGATGGAATTGGATCAAGAGCTCCGCAGACTGGACCAGCTGTCTCTGGTGAAAAGGCGCAAGACCAAGAAGTTGCGTCTTTCTTTCAGCGTGGAGTCGCTGATATCGGACGATAGTAAAACGCCGATGGTGAATGACGCCACAGAACTTATTGGGTGTCACCCTCGCCCGTCGAGAGGATGGCTTCCCGGGGAGAAACGGCTTGCGGCGGGAGAGGTACCGACGGCGACGGACCTTTCCAACTCATCCCATGAAGAGACGGTCCACCTCGGCGACCAGACAGAGCACAGACCCCCTACCTGGTTCCAGTCCCCCTACACTTCTCCTCAAAGGGTCCCCAGCCCCCCTCCGTGTCCCCTGCGTAAACACAAGAACAACCGAAAACCGAGGACCCCCTTCACCACGTCCCAGCTGCTGTCCCTGGAGAGGAGACGGTGGTCAACCGCATCGCCGCGGGAGAAGTCATCCAGCGGCCTGCCAACGCCATCAAAGAGATGCTGGAGAACTGGGGTCCCCAGCCCCCCTCCGTGTCCCCTGCGTAAACACAAGAACAACCGAAAACCGAGGACCCCCTTCACCACGTCCCAGCTGCTGTCCCTGGAGAGGAGGTTCCGGCAGAAACAGTACCTGTCCATCGCGGAGAGAGCCGAGTTCTCCGGGTCCCTCAGCCTGACGGAGACACAGGTCAAGATCTGGTTCCAGAACCGCCGGGCCAAGGCCAAGAGACTCCAGGAGGCCGAGCTGGAGAAGCTCAAGCTCATGGCCACCAAGCCGCTGCTCCCCGCCGCCTTCGCCGCCTTCCCCTTCCACATGCAGGGCCCTCTGTCGTTCGGCGGGGCCCTGCACGGAGCCCGGCCCGCGGCGCTGTCGACGGTGGTCAACCGCATCGCCGCGGGAGAAGTCATCCAGCGGCCTGCCAACGCCATCAAAGAGATGCTGGAGAACTGTTTAGATGCAAAGTCCACTAATGTCCAAAAAGAAGACATGGAAATAGTTTGTGAGCGGTTTACCACGAGCAAACTACAGAGCTTTGAGGACCTCTCTTCTATTTCCACGTATGGCTTCAGAGGGGAGGCGCTGGCCAGCATCAGCCATGTGGCCCATGTGACCATAACGACAAAGACAAAAGATGCAAAGTGTGCTTACAGGTACGCCATACACAACTCGGGGAAAAGCCTTTCTGTCAAAAAGCAAGGGGAGACGGTGGCGGACGTCCGGACCCTGCCCAACGCTTCCATCGTGGACAACATTCGAGGGGTATTTGGCAACGCAGTGAGCAGGGAGTTGATCGAAGTGGGCTGTGAGGACACCAAACTCGCCTTCAAGATGAAGGGCTACATCTCCAACGCAAACTACTCCGTGAAGAAGTGCATCCTCATCCTCTTCATCAACCATCGTCTGGTGGAGTCGAGTGCCCTGAAGAAAGCCATCGAGACCGTTTACGCCGCCTACCTCCCCAAGAACACGCACCCCTTTCTCTACCTCAGTCTGGAGATCGCCCCGCACAACATCGACGTGAACGTGCATCCCACCAAACACGAGGTGCACTTCCTGCACGAGGACTGCATCGTAGAGAGCTCGGCGGCGGGGGACTCGGCCGAGCGCGTCTACGCCCATCAGATGGTGCGGACCGACTCGCGGGCCCAGAAGCTGGACGCCTTCCTCCAGCCCAGGGAGAAGGTGACGGAGATGGCCAGTGCCAGCGGTGGAGGTGGAGGTGAGGGAAGCGAGGGCCAGGGCCAGGGCGCCATGGAGGACATGGAGGGGCTGGAGGACGACGCGGCCTTGCTGGAGGCCTTGGAGGAGCAGCCCGAGCCGGAGGACATGGAAAAAGCGTCCCAGGACCAGCCAGGAGCAGGAGCAGGAGAAGGAGGAGGAGCTTACCGCTGCGGCTACACCCAGGAGGCGTGGACCCTCATCCAGCACCACACCAAACTCTACCTGCTCAACACCACCAAGCTCAGCCAGGAGCTGTTTTATCAGATCCTGATTTATGACTTTGGAAACTTTGGCGTGTTGCGGCTGTCGGCGGAGGAGAGCGGCTGGACGGAGGAGGACGGACCCAAGGAGGGCCTGGCCCAGTACATCGTGGACTTCCTGACGAAGAAGGCCGAGATGCTGGAGGACTACTTCTCCCTGGAGATAGACCAGGACGGGAATCTGACCGGGCTGCCCATGATCCTGGACAACTACAGCCCTGTGATGGAAGGTCTGCCCATGTTTATCCTGCGCCTAGCAACAGAGGTGAACTGGGACGACGAGAAGGAATGCTTCCGGGACTTAAGTAAGGAGTGCAGCGCCTTCTACTCCATCAGGAAGCAGTACATCCTGGAGGCGGCGCCCCCCGGTGACGAGCAGGAGAACGCGGACGGCGAGGCGAGCTCGTGGCGCTGGAAGGTGGAGCACGCCGTGTTCAAGGCGTTCCGCAGCCTCTTCTCGCCGCCCAAGCGCTTCAGCGAGGACGGGAGCGTGCTGCAGATCGCCAACCTGCCCGACCTCTACAAGGTGTTCGAGAGGTGCTGA

Transcript

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	Homeobox

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan
PF01119	DNA_mis_repair	DNA mismatch repair protein, C-terminal domain	Family	Interproscan
PF16413	Mlh1_C	DNA mismatch repair protein Mlh1 C-terminus	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR013507	Domain	DNA mismatch repair protein, S5 domain 2-like	Interproscan
IPR014721	Homologous_superfamily	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Interproscan
IPR014762	Conserved_site	DNA mismatch repair, conserved site	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR020479	Domain	Homeobox domain, metazoa	Interproscan
IPR020568	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR032189	Domain	DNA mismatch repair protein Mlh1, C-terminal	Interproscan
IPR036890	Homologous_superfamily	Histidine kinase/HSP90-like ATPase superfamily	Interproscan
IPR038973	Family	DNA mismatch repair protein MutL/Mlh/Pms-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10073	DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006298	Biological Process	mismatch repair	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0030983	Molecular Function	mismatched DNA binding	Interproscan
GO:0032300	Cellular Component	mismatch repair complex	Interproscan
GO:0032389	Cellular Component	MutLalpha complex	Interproscan
GO:0140664	Molecular Function	ATP-dependent DNA damage sensor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-