Gene detail

Detailed information of KAG7264915.1 in Coryphaenoides rupestris Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAG7264915.1	ATP-DEPENDENT RNA HELICASE DBP3	PIJE02000981.1	102143	136974	+

Gene Structure

More details in Jbrowse Sequence

CDS

KAG7264915.1

ATGGCCATGACCATGATGTACTACACCGGCGCTGGCATGAACCCCGCTAGGTCCTTCGCCCCCGCGATCCTGTTCAGGAACTTCCTCAACCACTGGACGTACGTCCCGACGGTATTTGAGAACTACACGGCCAGTCTGGAGCTGGAGGAACATCGCGTGGAGCTGAGCCTCTGGGACACCTCAGGCTCTCCGTACTACAACAACGTGCGTCCGCTGTGCTACAGCGACTCGGACGCCGTCCTTCTGTGCTTCGACACCAGCCAGCCGCACACGGTGGATGGATCGCTGAAGAAGTGGAAGACCGAGATCCTGGACTTCTGTCCCAGCACACGGATCCTCCTGATCGGCTGCAAGACGGACCTGCGCACGGACGTGTGCACGCTGACAGAGCTGTCCAGCTACAAGCACACACCTGTGTCCCACGAGCAGAAGAGCGTGCACGGGGCCTTCCGCGCGGCGGCGGCGCTCGCCTGCGGGAACAAGCTGCCGCAGACGCCGCTCGCGTCGTCGCTGTCGGCGCCCAAGGCCGGCCCGGTGCGCAGGCTCTCTAAGAGACTGCTGCGGCTGTCCAACAGCACCAGCCTCCTGGGCTCCTCCTCCTCCTTCAAGTCCAAGGAGGACAACGGCAAGAGCTGCTCCATCATTGACAAGAAGGATGCAGAGTCCTCCAGCAAGGACCGGGAGAGGAAACCACGCAGTCGTTCCCGAGAGAGAAAGAGACATCGCTCACGGGAACGGAACCGCTCAAAGTCTCCAGAACGGAGTTTATCGCCAAAGTCCAAAGATAGGCTGAAGAGGGAGAAGGATATTAAAACGGAAGAAGATGAAGAAGAAAAAAAGAAGAAAGACAAAGCCCAACCGCTCTCGCTGGAAGAGCTCCTGGCCAAGAAGAAGGCAGAGGAGGAAGCGGAGGCCAAGGACCCCCAGGAGCGAGAGAGGCGAGAGAGGAGGGAGCGCATGGAGAGGGAGAGCAACGGAAACGACGAGGATGACGGGAGGCAGAAGATCAGAGAGGAGAAGGACAAGGGCAAAGAACTGCAGGCCATCAAGGAGCGCTACCTGGGCGGGCTCAAGAAGCGGCGACGCACGCGGCACCTGAACGACAGGAAGTTTGTCTTCGAGTGGGACGCCTCCGAGGACACGTCCATCGACTACAACCCCATCTACAAGGAGAAGCACCACGTGCAGCTGTATGGGCGCGGCTACATCGCCGGCATCGACCTGAAGCAGCAGAAGAGAGACCAGTCACACTTCTACGGCGAGCTGATGGAGAAGAGACGCACGCTGGAGGAGAAGGAACAGGAGGAGGTGCGTCTGAAGAAGGTCCGCAAGAAGGAGGCCAAGCAGCGGTGGGACGACCGCCACTGGTCCCAGAAGAAGCTGGAGGAGATGACGGACCGCGACTGGCGTATCTTCAGGGAGGACTACAGCATCACCACCAAGGGTGGCAAGATCCCCAACCCCATCCGCAACTGGAAGGAGTACACGCTGCCACCCCACATCCTGGAGGTCATCGACAAGTGCGGCTACAAGGACCCCACACCCATCCAGAGACAGGCCATTCCCATTGGCCTGCAGAACCGCGACATCATCGGTGTCGCCGAGACGGGTAGCGGTAAAACGGCCGCCTTCCTCATCCCCCTGCTGGTCTGGATCACCACGCTGCCCAAGATCGACAGGATCGAGGACTCGGACCAGGGTCCGTACGCCGTCATCCTGGCACCCACCCGTGAGCTGGCGCAGCAGATTGAGGAGGAGACCCTGAAGTTCGGCAAGCCGCTGGGCATCCGCACCGTGGCCGTGATCGGAGGTATCTCCCGAGAGGACCAAGGCTTCCGTCTCAGGATGGGTTGCGAGATTGTGATCGCCACGCCGGGTCGTCTGATCGACGTGCTGGAGAACCGTTACCTGGTGCTCGGCCGCTGCACCTACGTGGTTCTGGACGAGGCTGACCGCATGATAGACATGGGCTTCGAGCCCGACGTGCAGAAGATCCTGGAGTACATCCCCACGGTCATGTTCACCGCCACCATGCCCGCGGCGGTGGAGCGGCTGGCCAGGAGCTACCTGCGGCGCCCCGCGGTCGTCTACATCGGCTCTGCGGGCAAACCGCACGAGAGGGTGGAGCAGAAGGTGCTGCTGATGGGCGAGGGAGAGAAGAGGAAGAAGCTGTTGGAGGTGCTGAACCGGGGCTTCGAGCCGCCCATCATCATCTTCGTCAACCAGAAGAAGGGTTGCGACGTGCTCGCCAAGTCTCTGGAGAAGATGGGATTCAACGCTTGCACGCTCCACGGTGGCAAGGGTCAGGAGCAGCGAGAGTTTGCTCTGTCCAACCTCAAGGCCGGAGCCAAAGACATCCTGGTGGCCACTGACGTGGCCGACTACATCCATCGTATCGGCCGTACGGGCCGCGCGGGCAAGAGCGGCGTGGCCATGACCTTCCTGACCAAGGACGACGCGTCCGTCTTCTACGACCTGAAGCAGGCCATCATGGAGAGCCCCGTGGAGGTGGTGGAGGTGGAGGTGGTCGAAGTGGTGGAAGTGGAAGTGGAGGTGGTGGTGCAAACCACCATGAAGCCACAACTCCAGCTCGTTGACGCTCGATCTCGCCTGAGACTACGGAACCCATGA

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071	Ras	Ras family	Domain	Interproscan
PF00230	MIP	Major intrinsic protein	Family	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000425	Family	Major intrinsic protein	Interproscan
IPR000629	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR001806	Family	Small GTPase	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR023271	Homologous_superfamily	Aquaporin-like	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47958	ATP-DEPENDENT RNA HELICASE DBP3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0015267	Molecular Function	channel activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0071013	Cellular Component	catalytic step 2 spliceosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-