Gene detail

Detailed information of KAG7265453.1 in Coryphaenoides rupestris Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAG7265453.1	CONNEXIN	PIJE02000918.1	123680	151675	-

Gene Structure

More details in Jbrowse Sequence

CDS

KAG7265453.1

ATGGGTGACTGGAGCTTCCTGGGCCGTCTTCTGGAGAACGCCCAGGAACACTCTACCGTGATCGGCAAGGTGAGTCCTCCACCACCTCCACCACGACCTCTGTCCGACACCTCCACCACCACCACCACCACCTCCACCTCCACCACCACCACCACCACCACCACCACCTCCACCACCACCTCCACCCACCACCACCACCACCACCACCACCACCTCCATCCACCACCACCACCACCTCTGTCCGACAGCTCCATCCACACCCCTCTGTCTCCTTCCAAACTCCATCTCCATCCCCTCTGCCCCGCCCAGGTGTGGCTGACCGTCCTCTTCATCTTCCGTATCCTGGTCCTGGGCGCGGCCGCCGAGGAGGTCTGGGGCGACGAGCAGTCGGACTTCACGTGCAACACGAGGCAGCCAGGCTGCGAGAACGTGTGCTACGACGAGGCGTTCCCCATCTCCCACGTGCGCTTCTGGGTGCTGCAGATCATCTTCGTGTCCACGCCCACCCTCATCTACCTGGGCCATGTGCTGCACATCGTGCGCATGGAGGAGAAGCGGCGCGAGAAGGAGGAGGAGGAGCTCCGCAAGGCGGCCTGGCGAGGCGGCCGCGAGGAGCTCCTCCCGGGGCCGGAGGGCTATGGCGGTTACGGGAAGAAGGAGAAGCCGCCGATCCGCGACCAGCACGGGAAGATCCGCATCCGCGGCGCGCTGCTGAGGACCTACGTGTTCAACATCGTGTTCAAGACCCTGCTGGAGGTGGGCTTCCTGCTGGGCCAGTACTCGCTGTACGGCTTCCACCTCGAGCCGCTGTACCGCTGCGACCGATGGCCCTGCCCCAACACGGTGGACTGCTTCATCTCCAGGCCGACCGAGAAGACCATCTTCATCCTCTTCATGCTGGTGGTGGCTTGCATCTCGCTGCTGCTCAACCTGCTGGAGATGTACCACCTGGGCTGGAAGAAGGTCAAGCTCAGTGTCACCAACCAGTATGTGGCGTCCGACACCGAGTACCTACAGCTGCTGGGCGCCGGGGCCCCGGACCTGGGGCTGCTGGACCGTGGGGGGGACCCAGAGACCCAGACCCTTCCGGAGCACGCCAGCACCTCGCAGAACTGTCTGGAGCAGAACTGGCACAACGCAGGAGCTCCGCGGCCTCCTGAAGCCCGGGGAGAGGAGCTTCACGCAGCGCTGCCGCCTCCTCGTCGGCGACCTGCCGCCGGAGCTCCGCGAGGAGGAGCTGAGGAGGCTGAGAGCCGCACGCTGGCGGAAATTGCCAAAGCGGAGTTGGACGGCACCATTTTGAAGAACCGACCAATAAGGATCCGCTTCGCCACGCATGGCTCCGCCCTCACCGTGCGCAACCTGTCTCCAGTGGTCACCAATGAGCTGCTGGAAGAGGCCTTCTCCCAGTTCGGTCCGGTGGAGCGCGCCGTGGTGGTGGTGGACGACCGCGGCCGGCCCACGGGGAAGGGCTTCGTGGAGTTCGCCAACAAGCCAGCGGCCCGCAAAGCGCTGGAACGCTGCGGGGAGGGCGCCCTGCTGCTCACCACGACCCCGCGGCCGGCCATCGTGGAGCCCACCGAGCAGCTGGACCAGGAGGACGGACTCTCAGAGAAGCTGCTGCAGAAGACGTCCCAGTACCACAAGGAGCGGCAGCAGCCTCCGCACTTCGCCCAGCCGGGGACCTTCGAGTTCGAGTACTCGTCCCGCTGGAAGGCGCTGGACGAGATGGAGAAGCAGCAGCGGGAGCAGGTGGAGCGCAACATCCGCGAGGCGCGCGAGAAGCTGGAGGCGGAGCTGGAGACGGCCAAGCACGAGCACCAGCTCATGATGATGCGACAAGACCTGATGAGACGCCAGGAGGAGCTGAGGAGGTTGGAGGAGCTCAGGAACCAGGAGCTGCAGAAACGCAAGCAGATGGAGATGAGGCACGAGGAGGAACGGCGAAGGAGAGAGGATGAGATTCTGAGGCACCGAGAGCAGCAGGACGGATTCAAACCCAACTTCATGGAGGCCAGGGAACAGGAAATGAGAGGGGGTGAGCTGGGTCCTCGTGGAGCCATTAATATGGGAGATGGCTTTAACCCTTCCTCGGCCGGGCCCGCTGCCAGCCAGGTACCCCCTCAGATGATGGGCATGGGTGCCAGGGGTGGAGCCGTGGGCCCGGGGGGTGGAGCCGTGGGCCATGGGGGTGGAGCCGTGGGCCCGGTTGGCGCCATGGGCCAAGGGGGCGGACCCATGGGGCCGGGTGGAGCCGTAGGTCCCGTTGGCGCCATGGGTCAGGTTGGAGCCATGGGCCCGGGGGGTGGAGCCATGGGCCCAGACGGAGCCGGAAGTCCCCGCCCCGCCCACGTCCCCCCGCCACCATTACGCGCGGCCGTGCGTAAAGTGGAGCAGCGGCCCGGCGGCGCCACCGGGACGGGATTACGCGGCGGAGGCTGA

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00029	Connexin	Connexin	Domain	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF08075	NOPS	NOPS (NUC059) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000500	Family	Connexin	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR012975	Domain	NOPS	Interproscan
IPR013092	Domain	Connexin, N-terminal	Interproscan
IPR017990	Conserved_site	Connexin, conserved site	Interproscan
IPR019570	Domain	Gap junction protein, cysteine-rich domain	Interproscan
IPR034523	Domain	PSP1, RNA recognition motif 2	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR038359	Homologous_superfamily	Connexin, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11984	CONNEXIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005243	Molecular Function	gap junction channel activity	Interproscan
GO:0005922	Cellular Component	connexin complex	Interproscan
GO:0007154	Biological Process	cell communication	Interproscan
GO:0007267	Biological Process	cell-cell signaling	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-