Gene detail

Detailed information of KAG7268114.1 in Coryphaenoides rupestris Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAG7268114.1	TRANSCRIPTION INITIATION FACTOR IIH-RELATED	PIJE02000657.1	49037	113980	+

Gene Structure

More details in Jbrowse Sequence

CDS

KAG7268114.1

TCTGGAAAGGTTACTTGTACTCACTCAATGACTGTGTATTACAAAAACTACGAGATCATCCTTACGCAGGAGAGGTCTCCCAAGACTGTCAACAAGGTGCACCTTAATGGGAAACAAATACTCCCAACTTTCTCAAACAAAGACTTCACCATCACAAGTACCGTCATCCAAATGATGGTGACGATACAGGCGATTAAAGTGACTGTGCTTTTCAAGGGGCTGTCTTTCAGGGTTGACCTGCCCTATTCTGACTTCTACAACAACACAGAGGGACAGTGTGGTACCTGTGACAACGACCAAAGTAATGACTGCAGACTAAGAAGCGGTATGATCCATTCCTCGTGTTCTGAGATGGCTTCCGACTGGCAAATAGAGGTCGAGGGGAAGCCCTATTGTAAACCAGTCACACCCACCCCTTCACCACCCGTCACAGGACCCACCAAACCTCCTAGGTCAACCTCCCCGACACCACTTTGCAAACCTGATTTGTGTGAAGTTATCCTAAGCAGTGTCTTTGAGGAGTGCCGTAAGATACTCCCCTCACAGCCTTACTATCTTGCCTGCCAATACGATATTTGCCACACAACTCCTGAAAATGGCTGCGCTAGTTTGGAGACATACGCAGAAATATACAATGAGAAGTTTGTGGAGCCGTGCAAAAAAAAGAAAGAAAGCAAAGAGTTCATGCCCAGTTGTAACCCTGGCGTGTCCTGGCACAGTGGGTGTCAGCAGTGTGTGTGCGAACGGGACACCTTCCATGTGCAGTGCGAGCCTGTGACGTGTCCCACGCAAGAGCCGGTGTCCTGCGACAAGGAGGGGGAGGTGCTTGTGAATCACACGGTGGACTGCTGTGACAGTTTCACATGCGAACCCACACCAAACTGTGTCTTCAATGACACTTTGTACAAGGGCTACGTTTATGAAAGTGTGCCAGGCAAATGTTGTGGAAAATGTAGAAAGACGAGTTGTGTGGTTGAGCTTCCAGATAAGTCAACTCACATCATCGAGCCGTCCAAAACGTGGTCACCTCCAGGAAATAATTGTACCAAGTACGACTGTGTCAGACTGAATGAGGAGCTAACCACGGTTGAATCGAAAATGATGTGTGCTGACTTTCACCCAGAGAGCTGCATTCCTAAAAACACCACCTATCTTTACATTAAAGACTGCATGTCCACTGTGCCAGTGGAGCTCACAGCCTGTCAGGGATTCTGCGGAACCTCCTCAATGTATTCGCAGGAGAATAATGCCTTAATGCATACCTGTTCCTGTTGCAAAGAAGTCTCCAGCAGTAAGAAGGAGGTGGAGATGGTCTGCTCGGATGGCCAGAAGAAACGACAGTCCTACGTTTCCATCGACGAGTGTGGTCAGAAGATCAGTCCTGATGGTAAAGCCAAAATACAGCTGCAGCTGGTGCTTCATACTGGGGAGAGCAGCACATTCCACTTCTCCAACGACAGCAGTGCACTTAAGGACAGGGAGGCGGCCAAGGACCTGCTACAACAGCTACTGCCCAAATTTAAGAAGAAGGCCAACAAGGAGTTGGAGGAGAAAAATAGAATGCTGCAAGAGGACCCAGTGCTCTTCCAGCTGTATAAAGACTTGGTGGTAAGCCAGGTGATCAGCGCTGAGGAATTCTGGGCCAACCGGATGAGCGTGAATAACACAGAGAACTCCTCGTCAAATAAGAAACAGGACGTGGGCATATCTGCAGCCTTTCTCGCAGATATTAGACCTCAGACAGATGGCTGCAACGGCTTGAGGTACAACCTGACAGCTGACATTATTGAGTCCATCTTTAGAACGTACCCCACAGTGAAACAGAAGTACGGCGAGAATGTGCCTCACAACCTCACCGAGAAGGAGTTCTGGACGCGCTTCTTCCAGTCCCACTACTTCCACAGAGACCGCATCAGTACGGGCACACAGGACCTCTTCTCAGAGTATGCCCATGGTCCTGTTCCACTTGAGTCCCAACAGTACACTACCAGTCAGGACATCATTAACTCCGTCAACTGTATTCGACACGAAATGGCCAACTACAAACCAAACCTCACTCAGGTGTTGACCAGCAGCGCCGCCAGCTCTGCCATCGCTGCTCTGTCCCCAGGAGGCCTCTTAATGCAGACCGGCTCGCAGCAAGCCATAAACCTGTCAAAGAAGTGGCTGGCCTTGGGAACCTCTGCAGGGGGACTGCACCTCATCCAGAGGGAAGGCTGGAAGCAGAGACTTATTTTAACTCACAAGAAGTTTTGGCGCGTTGGAAACAAGGAGCGAGACGGGGAGTACGGCGCCTGCTTCTTCCCCCAGAGCCGCTGCCTGGCGGCGGGTCAGCCCCCGCTGCTGTACTGCGCCCGGCCCGGCTCCCGGATATGGGAGGCCAGCTTCAGCGGCGAAGTCCTGAGCACCCACCAGTTCAAACAGCTGCTCGCCTGCCCTCCTCTGCCCCTCGTCAGCTACAAAGACCAGCACCTGCTGACCTGGACTGATTCAGCCATCTACATCTTCAGGCCCCAGAGTGGACAGGTGCTTCTGTGGAGTGAAATTAAAGATGTGGTGGACATTGCGGTGCACCGCAGCGAGCTCTTCTGTCTCCACGGCAACGGGCAGCTGTCCCACCTGTCTCTGCTATCGGCAGAGCGGTGCGTGGAGAGGCTCCTGCGCCGCGAGTGGTGGGGCCTGGCCGCCAACGTCTGCTGCATGTTCCCCCATGCCTTCCTCCCCAGCAGGACCCGGAAGTTGATCCCCATCGACCGTATCGAGCATCTGAGGTCACAGCTCAGTCCCGCCTCTCAACCGGAGCTGATTGGTCAGCTGGACGAGGTCATTTCCAAGCTGGAGCCTCTGGACTCCGCCTCCAGCAGCCGTCGGAGCAGCATTTCTTCCCACGAGAGCTTCAATGTCTTGGACTGCGGCATATACCGTGTCATCAGCCGCCGAGGGAGTCAATCAGAGGAAGAGACAGGCTCCCTCATCAACCAATCCGCGTCCGAGGAGGAAAGACTCAAGGAATTTGCGTTTGGACCGGAGGAGGACCCGATCCTAACTTGGGACCACTATCTACCTCGGGTCTTGGGGGAGAGTGCTATCGCTGACCTCATGCCCCCTTACGAGGGTTATAGCCCGGACGTGGACCCCAGCGTGGTGAACGTGTTTTCAGCCGCTGCGTTCCGCTTTGCGCACGTCACGGTTCAGCCAATCGTGGCGAGGCTGGGGCCGGGATACGGCCTCGACCCCCAGCATCCTCCGCTGCCTCTGCATCACTCCCTGTTTGCTTCCTGGAGAGTTGTGCAGGAAGGTGGGGTGGACCCTGTGCTGCGGGGCCTCTTGCTGTCCCCGGCGAAGCTGCAGGTTCCCGGGCAGATGATGGTGGAGGAGCTGACAGAGAGGCTGTTCCAGGCCCAGGGCGGGATGCCCCTGGACCTGGGGGCCCTCAACCTACAGAGAGGACGAGACCACGGGCTGCCTGGATACAGCTCATGGCGGGAGTTCTGCGGCCTCTCCGTGCCCAACACCACCACGGACCTGGCCCACATCCTGGGCAACCTGGCCCTGGCGCAAAAGTTCCTGGATCTGTACGGCACGCCGGGCAACATCGACGTCTGGGTGGGGGCCATCTCAGAGCCGGCTCTGCCTGGGGGCCGCGTGGGGCCCCTGCTGGCCTGCCTGCTGGCCAAACAGTTCAGGGCCCTGCGAGATGGAGACAGGTTCGTATTGAACGAGGATCAGAAGAGACAGTTTGAAAAGCTATCCATGTACTGTGACCGCTACGCTGAGCTCATTCCTGTGTCCTTTGTGCTCGGATTCTACGTCACGCTGGTGGTGTCCCGCTGGTGGGGTCAGTTCGAGAGCATTCCTTGGCCGGATCGGCTGGCGGCGCTGGTGGGCGGCCACGTCCGGGGCGTGGACGAGCCGGCCCGGTTGACCCGGCGCACGCTGATGCGGTACGCCAACCTGTCCGGGGCGCTCATCTACCGCTCGGTCAGCACCGCCGTCTACAAGCGCTTCCCCACTATGGAGCACCTGGTGCAGGCAGGCCTCATGACGCCAGAGGAGTTGAGGCACCTGGAGGCCCTGCCCTCCCCTCACAACAAGTTCTGGGTGCCCTGCATGTGGTTCGTGAGCCTGGCGCTGCGAGCGCGGACAGAGGGCCGCATCAACAACGACGTGGCCCTGACCGCCATCCTCGCCGTGGTGACCGTGGCCGTCTACAGTTTCTTCCTGGCTTGTCTGATTGGTCGGCAGTTTTTGGACCCAGCCCAAGGTTACCCGGGTCACGATCTGGACTTCTATCTGCCCGTCTTCACTCTGTTGCAGTTCTTCTTCTATGTGTCCTTGTTGTCTGTGGATGAGATGTATGACAGCCTGCCGGTGGTAGAAAGGGATAAGTACTGGAATGAATCAGAACCCCAGCCTCCGTACACGGCCGCGAGCGCCGAGCACCGCAAGCCCTCCTTCATGGGTTCCGCCCTGGACATCAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGCCGCCGCCACCTCGCCCCGAAACCTGGCGGTAAACAAGGAGAAGAAGGCTTAG

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00094	VWD	von Willebrand factor type D domain	Domain	Interproscan
PF01062	Bestrophin	Bestrophin, RFP-TM, chloride channel	Family	Interproscan
PF03098	An_peroxidase	Animal haem peroxidase	Domain	Interproscan
PF03909	BSD	BSD domain	Domain	Interproscan
PF08567	PH_TFIIH	TFIIH p62 subunit, N-terminal domain	Domain	Interproscan
PF08742	C8	C8 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001007	Domain	VWFC domain	Interproscan
IPR001846	Domain	von Willebrand factor, type D domain	Interproscan
IPR005607	Domain	BSD domain	Interproscan
IPR006207	Domain	Cystine knot, C-terminal	Interproscan
IPR010255	Homologous_superfamily	Haem peroxidase superfamily	Interproscan
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR013876	Domain	TFIIH p62 subunit, N-terminal	Interproscan
IPR014853	Domain	VWF/SSPO/Zonadhesin-like, cysteine-rich domain	Interproscan
IPR019791	Family	Haem peroxidase, animal-type	Interproscan
IPR021134	Family	Bestrophin-like	Interproscan
IPR027079	Family	TFIIH subunit Tfb1/GTF2H1	Interproscan
IPR035925	Homologous_superfamily	BSD domain superfamily	Interproscan
IPR037120	Homologous_superfamily	Haem peroxidase domain superfamily, animal type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12856	TRANSCRIPTION INITIATION FACTOR IIH-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000439	Cellular Component	transcription factor TFIIH core complex	Interproscan
GO:0004601	Molecular Function	peroxidase activity	Interproscan
GO:0005254	Molecular Function	chloride channel activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005675	Cellular Component	transcription factor TFIIH holo complex	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0006289	Biological Process	nucleotide-excision repair	Interproscan
GO:0006351	Biological Process	DNA-templated transcription	Interproscan
GO:0006360	Biological Process	transcription by RNA polymerase I	Interproscan
GO:0006366	Biological Process	transcription by RNA polymerase II	Interproscan
GO:0006979	Biological Process	response to oxidative stress	Interproscan
GO:0020037	Molecular Function	heme binding	Interproscan
GO:0070816	Biological Process	obsolete phosphorylation of RNA polymerase II C-terminal domain	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-