Gene detail

Detailed information of KAG7268952.1 in Coryphaenoides rupestris Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAG7268952.1	HYPOXIA-INDUCIBLE FACTOR 1 ALPHA	PIJE02000585.1	161755	217993	+

Gene Structure

More details in Jbrowse Sequence

CDS

KAG7268952.1

ATGCTGACCTCTCTGGGACAGCAGGTGGGTAGGCCGCCGGGGTGGGCCCGGACCCGCCGGGGTGGGCCCGGACCCGCCGAGGTGGGCCCGGACCCCCCCGAGGTAGGCTCGGACCCGCCGGGTTGGGCTCGGACCCACCGGGACCTGCCTCCCCCAACCGGCTACAGGGGTGAGGCGGGAACCGAGGAGGCGTGTCTGGTGCAGCTCCCCTGCTTCCTCTTCCTGTGCTACCGTTATGGCCTTGCTCCACAGTGTGTCCTGGCTCGGCTCCAGCACGAGACCCCTCCCTCCTATATGAGCAGCTCCGATCGACGCAAGGAGAAGTCCCGGGACGCGGCGCGCTGCAGGAGGAGCAAGGAGACGGAGGTGTTCTACGAGCTGGCTCGCCAGCTGCCCCTCCCCCACAGCCTCACCTCCCACCTGGACAAGGCCTCCATCATGAGGCTGGCCATCAGCTTCCTGCGCACACGCAAGCTGGTCACCTCCGATGGTAGCATCAGTGACTGTGAGCAGGACAAACAGATGGACAACCTCTACCTGAAGTCTCTGGAGGGCTTTGTTACCGTGGTTACCTCCGACGGCGACATGGTCTTTCTGTCCGACAACATCAGCAAGTTCATGGGCCTCACACAGGTGGAGCTTACAGGTCACAGTATCTTTGACTTCACCCACCCTTGCCGCGGTTTTGGTAAGAAAGGTAAAGAGCTGAACACTGAACGAGACTTTTTCATGCGGATGAAATGTACCGTGACCAATCGGGGACGCACAGTCAACCTGAAATCAGCTAGCTGGAAGGTGCTGCACTGCACGGGTCACATCAAGATGGTCGGCAGCTGTCCGCCGCGCGCACTGTGCGGCTACACAGAGCCCCCACTCACCTGCGCCGTCCTGATGTGCGAACCCATCCCTCACCCCTCCAACATCGACACGCCCCTGGACAGCAAGACCTTCCTCAGCCGACATGGCATGGACATGAAGTTCACCTACTGTGACAACAGCAAAGGACAGGCGGTAAGCAGCCAGTACCGCATGCTGGCAAAACACGGGGGCTTCGTCTGGGTAGAAACCCAGGGGTCTGTCATCTACAACAGCCGTAACTCCCAGCCACAGTGTATCGTCTGCATCAATTATGTCCTCAGTGACATTGAGGAGGAGTCAACGATTTTCTCCATGGAGCAAACAGAGTCTCTGTTCAAACCACGGCCCATGTGCAGCTTCTTCAGCGACGCAGGGGCATCCGCCTCGGCGTCTGAAGAGCCGGCGGATCCGCTCTTCACCAAACTCAAAGAGGAGCCGGAGGACCTGGCACAGCTGGCGCCCACGCCCGGCGACACCATCATCGCTCTTGACTTTGGTCCTCCAGAGTTTGATGAGCCAGCATATAACCAGGTACCTGCCGCCTCGATGGCTACCCCAGCCCCGGGGCCCGGAGACATGGCTAAGATGGGCGGAACGTTTAGTGCTGCCCAGAACCCGCCTCCTGGCAGCGCTACACCTAGCCTCAGCAGCTGCTCCACGCCCAGCAGCCCGGGTGAACACTACGGCTATGTGGAGAGTGACCTGAAGGTGGAACTCACTGAGAAACTGTTTGCTTTGGACACGGACGATAGCAACAGCTCTGCAAACACTGAGGGGGACCTGAGTGACCTGGACCTGGAGACCCTGGCTCCGTACATCCCCATGGATGGGGAGGACTTCCAACTCCACCCCATCGTCCCAGACTTGGAGCCCGTAGATCTGGCCCCCGCCGCCGGGTCCCTGGCGGGTCCCCACGCCAGCACCCAGCACAGCTTCAGCAACATCGTCAGCCTCTTCCAGCCCCTGTCAGCCCACGGCGAGAGTGAGAGCCGCTACCCCTGGACCCCAGGGGAGAAGAGAGGAGGCCCCCGCGGACATCCCCAGGGCCCCGTGGATCCCAGGCTGTGTTCCTGCATGGTGGACCGCACTCGGATCCCTCCCTACCAAGATCAGGCCAGCACCCCTCTCTCTTCTATGGGTGGCAGACAGAATGTCCAGTGGCCCCCGGACCCGCTGTTAACCTACCAACAACATCGGCCGGTGTCCAAGGCCTACCCGATGGAGCGCCTGTCAAGACAGGAGCGTCCTTCCGGTCATCGGAGCATGAGCAGTCTGATGCCCAAACAGAGGGCCAGAAACATGAAGAGACCCTTCACCCAGATGGTGGTGAGTCAGACATGGGAGGAGTCATGTTGGGCAGCATGTCCCCAGTGTCTCGGTCACCTGCATCAGCACAGGGACGTCCAGTACCCAGGAAGTGGACTAAGTGTAGCGAGCAGGAAACCCTTCCCCCTGCCAGAGTGCAGCTACACCCAATACAACATGCTGCCGGCTCACACTAGACACGGTGTGGTGAGTCGTCTGCTGGTGCCGTCGTCGGGGCCCTGCTACCTGCCTGAGCTAACCCGCTACGACTGTGAGGTGAACGTCCCGCTGCAGGGCAACCTTCACCTCCTCCAGGGCTGTGACCTCCTGCAGGCTCTGGACCAGGCCACTTAG

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08778	HIF-1a_CTAD	HIF-1 alpha C terminal transactivation domain	Domain	Interproscan
PF11413	HIF-1	Hypoxia-inducible factor-1	Family	Interproscan
PF14598	PAS_11	PAS domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000014	Domain	PAS domain	Interproscan
IPR001610	Repeat	PAC motif	Interproscan
IPR011598	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR014887	Domain	HIF-1 alpha, C-terminal transactivation domain	Interproscan
IPR021537	Domain	Hypoxia-inducible factor, alpha subunit-like	Interproscan
IPR035965	Homologous_superfamily	PAS domain superfamily	Interproscan
IPR036638	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23043	HYPOXIA-INDUCIBLE FACTOR 1 ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0046983	Molecular Function	protein dimerization activity	Interproscan
GO:0071456	Biological Process	cellular response to hypoxia	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-