Gene detail

Detailed information of KAG7269598.1 in Coryphaenoides rupestris Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAG7269598.1	SORTING NEXIN-8	PIJE02000538.1	249936	284921	+

Gene Structure

More details in Jbrowse Sequence

CDS

KAG7269598.1

ATGACCCGCCGAGCCATGGCAGGACAGATCAATGAAGGCTCCGTCCCGCCGTACTACAGGGAGGTGTATGAGGCCCTCCGCTGCAGGTCGGAGGAGAGGGTGCAGGTGGAGGTGTTCCACAGGTTACTCCACCGGGCAGACCTCCAGAAGGCGGATCTGGCACAGATTGCCGAGCACGTCGAGCCGTCGGGAGGCTATCTGAGCAAGCTGACCCTCTACAAGGCGCTGGCCCTGATCGCCCTCGCCCAGCAGGGCAAGCAGCCCAGCCCCAAGCTCCTGGAGAACTGCATACAAGAGCTGCCCAGGCCACAGCTGGGCGAGCCCAAGGACCTGGCGTCGCTGAGGGTGCAGCCGACCCCGGACGACCCGCTCACCGTGGCCCACAGCCTGGACCGCCTGCTGGCCCGCGACAACGTGCAGGTGGAGCTCATCCCCGAGAAGAAGGGCCTGTTCCTCAAGCACGTGGAGTACCAGGTCACCAGCCAGCACCACAAGATATCCGTTTACAGGCGCTACACGGATTTCGACGTCTTCCACGAGCTGCTGGTGCAGAGGTTCGCCTACAGAATGCGGGAGTTCATCGAGGGCCGGCGGCGGGCGCTGGGCCGGTTCGTTAACCTGGTAGCGCGGCACCCCTTCTCCGCCGACGACGAGCTGGTGAAAATCTTCCTCACCTTCAACGGCTCGGACGTTCAAACTAAGCTCCGTGATTCCTACAAGAGAACGGGCGACGAGTTCATAACGAACCGGATTGCGACGCAGGCGAAGGAATATCTTCCGACGGACATCCAGAACCAGTTCTCGGCCAGCAGGGAGCTGATCAGGAACATCCACAACAGCTTCCACAAGCTGCGCGACAGAGCTGAGAAAATGGCCGAGCGCTCCAAAGGGAACGCCACCGACTTGCTCATATGCATCCTCCATCCCCTCGCTGGCCTCCTCTCAGAGCACCTGGGCGACTTTGCGGAAGTCTCTGAAGGCCTGTCGGTGGAGTTTGCGTTGCTATCGGAAAAAGCGGGTCAACAGGGTCGACGTGAGGAGGATGACGTGGTGGAGAAACTGAATTTCTTCCTGGATTTGCTGCAGTCGTACAGAGGCGTCCTCCACGAACACCAGAGGGCGCTGCAGAAGTACAGCGTGATGAAGAGGCAGATGATGAGCGCCACTGCCGCGCAGACCAAGGAGCCCGTGTCCGTGGAGCAGCTGGAGTCACGCATCGTGCAGCAAGAGAACGCCATCCAGATCATGGAACTACGCAACTACTTCTCCCTGTTCTGCCTCCACCAAGAGACCCAGCTCATCTTCACCTACCTGCCCATGACCTACCACATCCTGGGGGCCTTCGTCAAGTCCCAGGTCCAAGGACACGCGGAGCAAGAGAACGCCATCCAGATCATGGAACTACGCAACTACTTCTCCCTGTTCTGCCTCCACCAAGAGACCCAGCTCATCTTCACCTACCTGCCCATGACCTACCACATCCTGGGGGCCTTTGTCAAGTCCCAGGTCCAAGGACACGCGGAGATGGGTGAAGTGTGGAACGAACTTCAGCCTAAACTTGGATTCCTCTTTGATACACACAAAAACAAAATGTCGTTTCCTCGCCGATCATCATCATTATTATTCTGCACTATTTCACTTTTCCCGCACAAAAGACACGCCGCCGTGCACACCACAGCAGTCCTCGGGAACAAGAAGACGAACCTCAAAGGTAAAAGTAGCGCCTGGCTGACGCGGCAGCTCAGCGACCCGTACGTGAAGGCGTCCCGCGTCCACAACTACCGCTGCAGGAGCGCCTTCAAGCTGCTGGAGATCGACGACAAGTACCGCCTCCTGGCGCCCGGCCGCCGCGTGCTGCCCCGCGGCACGGTGGTGGGCGTGGACCTCCTGAACATCGCGCCCCTGGACGGCGCCCACTTCCTGTCCAGCCACGACATCACCGACCCCGCCACGCACGCCCGGCTCCGGTCCCTGCTGCCCGCCGACGCCGGCGCCGGCGCCATGGCCGACGTCATCCTCAGCGACATGGCGCCCAACGCCAGCGGATTCAGAGACATGGACAAGGAGAGGCTGGTCGCCATGTGCCTGTCGCTGGTCGACCTGAGCGAGAAGCTGCTGCGGCCCGGCGGCTCCCTGCTGTGCAAGTACTGGGACGGCTTCGCGGCGTCCTCGCTGCAGAGGAGCCTGGCCGCCGTGTTCGGCGACGTGCGCTCCGTGAAGCCCAAGGCGAGCAGGAAGGAGTCGTCGGAGGCTTATTTCCTGGCGAGGATGTACAGGACAATAAAGCAATGA

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00787	PX	PX domain	Domain	Interproscan
PF01728	FtsJ	FtsJ-like methyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001683	Domain	Phox homology	Interproscan
IPR002877	Domain	Ribosomal RNA methyltransferase, FtsJ domain	Interproscan
IPR015507	Family	Ribosomal RNA large subunit methyltransferase E	Interproscan
IPR028662	Family	Sorting nexin-8/Mvp1	Interproscan
IPR029063	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR036871	Homologous_superfamily	PX domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46571	SORTING NEXIN-8	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001510	Biological Process	RNA methylation	Interproscan
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0008168	Molecular Function	methyltransferase activity	Interproscan
GO:0031901	Cellular Component	early endosome membrane	Interproscan
GO:0032259	Biological Process	methylation	Interproscan
GO:0034498	Biological Process	early endosome to Golgi transport	Interproscan
GO:0035091	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0042147	Biological Process	retrograde transport, endosome to Golgi	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-