Gene detail

Detailed information of KAG7282219.1 in Coryphaenoides rupestris Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAG7282219.1	HOMEOBOX PROTEIN ABDOMINAL-B	PIJE02000029.1	259401	270352	-

Gene Structure

More details in Jbrowse Sequence

CDS

KAG7282219.1

ATGACGGAGTACGATGATCGCGGCAACTGTGCTTCAAATATGTATTTACCGAATTGCACCTATTACGTTTCGGCGCCAGATTTTTCATCAGTTAGTCCTTTTTTACCGCAGACCACGACGTGTCAAATTAATTTCCCATATTCTCCCAACATAGCCCAAGTCCAACCAGTTCGCGAAGTCGCTTTTAGGGATTATGGACTGGATCATCCGAGCAAATGGCACTACAGGGGCAACTACGCGTCTTACTACTCCACGGAGGAGATCATGCAACGGGATTTAATTCAGGCTTCTGGCAGGGCGGACATGCTGTTCAAAAATGACTCGTACGGCCACCACGTTGGTGCGAACTCGACGTGCAATTTCCTCGCCAACGTTGGCCGGAATGGGGTTCTTCCGCAGGGGTTCGACCAGTTTTTCGAGACCATCAACTCGGAGAAGACCAACCCGGAGCACACAAAACAAAAGACAGACTCGCCTGTCCCCGTGGAGGCTACAGATAATGGTGAGACCATAAACACACCAGAACAATCCAAAGCAGAGTCAACGGAGAACCTCAATGAAGACTCATCCCTGGAGTCCGGTGACAAGAGCAGCGACCAGAGTTCAGCCAAATCGCGTAAAAAGCGATGCCCTTACTCCAAGTACCAGATCCGAGAGCTGGAACGAGAATTCTTCTTCAACGTGTACATAAACAAGGAGAAGAGGCTGCAGTTGTCCAGGATGCTGAACCTGTCAGACCGCCAGGTGAAGATTTGGTTCCAGAACAGGAGGATGAAGGAGAAAAAACTGAACCGGGATCGCCTACACTCTCCTGCGGCAAACCCCTTTCTGGTGGACTCGCTAATTGGTGCATGTCGGACGGACAGCTTCTACTCCAACAGCGGGCTGTACATGTCTTCTGGTGCAGACATGGGAACTTACGGAATGCAAACCTGTGGACTTATGCCGTCCTTCGGCAAGAGAGGGGAGGTGAACCACCAAAACATGGGGATGAATGTCCACTCGTACATACCGCAGCTAGATAACTGGGCTGACCCGAACCGATCTTGCAGGCTAGAGCCCAACATGAGTCAGATATCCAGTGTTACGTTTCCACAGAGTATTAAGGCAGAAAGCAACTGCTGCATGTACTCCGACAATAAGAGAGCAAAAGACAGCTCCTCGGAGGTCCCGACATACTCCAACCTCGTCCCCGAGTCGTGCGCAGTGGACGGTCCAGAGATACCGGTCCCGGGATACTTTAGGTTGAGTCAAACGTACGCGAGTGGAAAGCACCAGGATTACTGTCACGAACCGCCCAGTCCAAACACCACCACCACCACCACCACCACCACCACGTTGATGCAACTCAATCATGTAGTGGCGCCCAAGACACACGCGTCCTACGCCGATGTGGTGGACAAGGCGTCGGAGAGCTCGCCACAGAACCGCGAAGCCTCACGAACACCGGAGCCCGTCGAGGGTCCAGACGCCAAGTCCTGCGCGGAGGAGAAGAGGGAGTCCTCTGTGTCCAGCAGCCCCGAGTCATCCCAGACGGAAACCAAAGAGTTCAAAAATGATGCTCCCACAAGCAATTGGCTGACGGCGAAAAGCGGCCGAAAGAAACGCTGTCCCTACACAAAACACCAGACTCTGGAGCTGGAGAAGGAGTTCCTGTTCAACATGTATCTGACCCGAGAGCGCCGCCTAGAGATCAGCAAGTGCGTGAACCTGAGTGACAGGCAGGTCAAGATCTGGTTCCAGAACCGCAGGATGAAGCTGAAGAAGATGAGCAGGGAAAACCGCATCCGAGAACTCACGTCCAATCTCACCTTTTCAGATCAAAAAATGTCCACCAGTAGCACTCTTGGTAACTGTTATGTCGAATCCATCATGGGCCACGACGCCGAGGACGTGTTCGGCGCCGCGCGTTTTATCCAAGGTCCGCAGCACACGGTGACCTCAAGGCCACCAGGTACCGGGGACCACGGCGACTTCTCCTCGTGTCATTTCGCGCCCAAGTCGGCTGTGTTCCCATCGTCCTGGTCCTCCGTGCACCCGCCGCACCCCACCGCGGCTCTGTCGGGAATCTACCATCCGTACGCGCACCAGGCGCACCTCTCCGCCGCGGACAACAGCAGATATGTCCGCTCGTGGATGGACCCTCCCGGCATCTCCAACCACGTTGCGTTTTCCGGGGGCTTCCCCTCCTCCAGCCGTCCATATGGTGGAGCCAAGCCCGAGAGCGTCCCGGCGAAGAGCAGCGGCGAGTGCGGGGCGCCCTTCGGGTCCCGGGAGCCTCGTCCGGCCGTCGCGGAGGATTTCGCTCGCGGAGTATCCGAACGCAACGAGAAATCGCCGAAAGAGAACATTGGAAGTGATCTTTCGAACCACAGCGAGCCAAAAGAGGAGAAACAACAACTTGACCCAAACAACCCAGCAGCGAACTGGATTCATGCTCGCTCCACCAGAAAGAAGCGATGCCCGTACACCAAATATCAGACTTTAGAGTTGGAAAAGGAGTTTCTATACAACATGTATTTGACCAGGGACCGGCGGTATGAGGTGGCCCGTATACTCAGCTTAACCGAGAGACAGGTGAAGATATGGTTCCAGAACAGAAGGATGAAGATGAAGAAGATGAACAGGGAGAGGAACAGCAAGGAGCACTTGTGA

Transcript

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	Homeobox

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan
PF04617	Hox9_act	Hox9 activation region	Family	Interproscan
PF12045	DUF3528	Protein of unknown function (DUF3528)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR006711	Domain	Hox9, N-terminal activation domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR020479	Domain	Homeobox domain, metazoa	Interproscan
IPR021918	Domain	Domain of unknown function DUF3528, homeobox protein, eukaryotic	Interproscan
IPR046333	Family	Homeobox protein Hox-A10/abdominal-B-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45874	HOMEOBOX PROTEIN ABDOMINAL-B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006351	Biological Process	DNA-templated transcription	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-