Gene detail

Detailed information of KAJ8377647.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8377647.1	NUCLEAR PROTEIN LOCALIZATION 4	AAFF_1.1_unplaced_344	143884	204175	-

Gene Structure

More details in Jbrowse Sequence

CDS

AAFF_T00254920

atgtttgatatcaccaCAATTCTCAGCAtaagaggagcatatcaatgCTCTGTAATCATGGACTCTGAGACCATTGAAATTGCAGCCCTCGGACGACCTCTGCACCCTGGCATGCTGTATGATCGTCGCAGTGACACCTTCATCCCAGGAGTCTCCCTTTGGGATGGAGCTGCCATAGAAAAAGATTTGAGTGTGAAACCACAGCCCCGCACCAGCTTTAATTTCACTGCGTCCGACTCCTTCAGTGAGAAGAGCAGCTTGCTGGACGTGAGCGCCTCCCTGAAGGCCAGCTTCCTGGGGGGgctggtggaggtgggggggtcgGCCAGTTATCTGAAGGACAGAGAATCCTCCATGCTCCAATGCAGGGTAACGATGCAATACAAACAGACAACTCAGTTCAAGCAGCTGACTATGACCCAACTGGGACATGTGACCTACCCTGAGGTGTTTGACCAGCAGACCGCCACCCACGTGGTCACAGCAGTATTGTACGGGGCCGAGGCCTTCATGGTCTTTGATCAGACAGCTTCTGTTGAAGAAGACAAGCAAGACATTCAGGGGAACCTGGACATTATGGTCAAGGTTATTCCTACTATTGAAATCAGTGGTTCAGGAAAAGTGGTCATGACAGATGAGGAGAAGAGGAAGGTGGAGAAGTTCAGCTGCACATTCCACGGTGATTTCATACTGGAGCAGAACCCCTCTACTTATGAGGAAGCCGTGCTGGTGTACAAAGGTCTCCCAAAGCTGctgggggagaagggggagaatGTGGTGCCCGTAAGAGTGTGGCTGTATCCTCTGAAGAGCCTGGACTCCAAAGCGGCCCGGCTGGAGAGAGAGATCCGAGAGGAGCAGGTGTCGTGTGTGGAGGACGTGATGGAGCAGCTTCATGAGGCTGAGATGAGAGCCAACAGCTTGACCAACCAGTGTGAAGCCATCAAGGTCACTGATATAATAGACAAGATGACTAAGTTCCAGAGAAAACTCAGGGATTACACAGTCCCACTCCAGCAGAATCTGGGAAGGGTTCTGATAGCCATCCGGGCAGGTACTGAGGAGGAGCAGAAGCTGGCCGACATCCTGAAGTTCCATGAAGAGTCCTCCTTCACCCAGACAAAGATGAATAAATGGCTGGATGAAAAAGAGTCTGAGATAGGGGTGCTGAGAGCCTACATTGATCTTCTGCAGAATGTCCCCATTGTGCCTCCAGGCCCTGAGCTGAACACAGTCATCTTTGATccccagaatggctttgtctttATGCTCACCTTCACATCTCTGAAGTATGAGGAGCCTTACCTCTCAAACCTCTCTGAGTGCCTGGCATTGGCAGAGTTCAGAAGAATGGAGGACATCTCTGTAGCTCATCAACACAGCTTCAAAGAGGAGGCCCTGCCATGTGAGGGTGTGGACACAGTGACACTGAGGTTACCAACACTGAACCCCAATGTCCTGCAGTACAGAGTGGAGCACAGAGAGGTACAGGGCGTGGCCCAGGGCGGGGCCCAGGGCGGGGCTCAGGGCGGGGCTCAGGGCGGGGCTCAGGCCCAGGGCGGGGCTCAGGGAGACGCAGAGATTGGGGCGGCGTGGACCATCACAGACACACCTGGCAATCAGACAGAGCTGACCGTCTCAGGACTGCGGCCAAACACTCAGTACCAGGTCAGGCTGAGCTTGGTCACTGCTGAGGGAACCAGCCAACCAGGCAGCGTCATTCAGATCCACACCAAAGACAAAGCTAAcctccaccaggctaccagcctccagctCTACAGCAGCCGgcctccaccaggctaccagcctccagctCTACAGCAGCCGGCCTCCACCAGGCCTCCGGCCTTCAGCAGCCTAGCTGGCTTCCTCCAGGCTACCGGCCGTAGTTGGCCCCAGCACCAATCgcaagagaggaggggaggtgggTGGGGCCTGGAGGGCTATAAGAGTCCGTGGGGACCAGGGCGCTGGCCCAGAGCAAGCATAGCCTCGCAAGAAACCACGCCCACACCACGAGAAACCACGCCCACACCACGGGAAACCACGCCCACACCTGCGATCCAGCCCGAGGACAGGCAGAGACGGGGGCATTCGGCTAACCTTAAACTACCCCCAGAGCAGGACAAGGTGGAGatcggggggagggggagggaaaacgAGAGGTGCGGGACTGTGGGCCTGAACAGGCatgggagatttgTTCTCATCATTTTTTCTGAATCCGAAGATTATGGGATTTGGGTCGTCTTTACTGACCCGCCCCAGGCAGCTCTAATGAAATACAGATCTAAATCCGTCTTCAGGGCGATTGCTGACGAGGAGCTGTTTAATAGGATCACTGTGTCCCTGTTAAGCTGGGACAGCCCCCCAGCCATGAACCTGGAGGCCCCCAAGCCGGAGGTGAAGTCCGCCACGCGAGTCACTGGCGGCCCCGCCACGCCGCGCAAAGGACCCCCCAAATTCAAGCAGAGGCAGACCCGCCAGTTCAAGAGCAAGCCCCCAAAGAAGGGGGTCCAGGGATTCGGAGACGACATTCCTGGAATGGAGGGACTAGGCActgACATCACTGTTATTTGTCCCTGGGAGGCCTTCAACCACCTGGAGCTCCATGAGCTGGCTCAgCTGTTGGAGtattcctcactcacacagcattttgagtttgtgtttgagtttgtgtttgagtttgagtttgagtttgagtttgagtttgagtttgagtttgagtttgagtttgagtttgagtttgagtttgagtttgatcCCCTGATGAACCCAGCACCTCAAGTGTGCCAGACCCTGTACGTCCTGCAGGTGTACGGGGCCTCAGGTGGGGAATGTGCCCCCACCCTGCCGGACCCGTCTCACGCACAGAGTGGCGGAATGTGCCACGCACACGAGCGTGAGGACTGTACGTGGAGAGatcctcagacagggagagattgggatgtgctgtgtttgggtccagagtcacaggagctgaaggtgcagagaatgagacatcagcacttcttcttcgtcgtttgggccgcgcaggaggccaagccccatctgtgcatcgatgagcagaaacgcccgacgccagtccggaggcggttaagcctcacccacgccagtcggggcaggtccaccccgatggggggaggaccgacgtctgggatgaagtcacggagtctagaggagttcccgtgcggcaggcacaaatgggtgtctcgacttgaggcgccgggaggctcagctgttagacctgacccgactagtcgcctcatcaatgccacacgagatgttagcttcttgcgcagtgacgcgaggtgtcggcgaaacgtgagcgacctgtccagtgtcacgccgagatggaaggctgccgacaccgtctttgcctcgctgagcttcaatctcaatttctggaggcaagtcataggtgtagatgttatagaggaggggggccaggaccgatccctggggacgccgttcttgaggcgtcgtaacctacttcgctgtccgctaccggtggtgagggtgaagctgcgatttcggacaagctccatgatcattctgaccatgtgcctgtctggcagcaggcggagcagcttgcagcctgctcccggggagcagtgggtcaacaatcggttcgacgcgggtgtagataagacgctcaaggatcttgaaggggatgcagagcaaagagatgggatggtgttggggccctccagagtgggtttcctggaggaggatgacgagggccttgaaggtataggccagcttttcgatgacactgatcttactggtggtgagcccttcggtgttcagctgcagtattctgggttggaggccagtggagcaagccccaccggctctcctccccgacTGCTGCCGAGCACCAGCCCGGacctcctcaccccctataccaacgtcagggccctcagatctgctgataagggtctcctaaccacccgtaagtccaacctcaagtctaggggggggcgtgcttttgctgtcgcggcccctgacctctggaacagcatccccatgtccatcagatttgccccctccatcgagtcctttaaatctaagctcaaaactcacttACACGCTTTACAGAAGCTGTGGCTGCACTTCAGGAGAATAGGATCCCTGAAGATTTCagtgcacacaggacaggagagctcCTCTTCCAGGAGAGAAAATCTGCCCgccattctgtctACACACCTCATCAGAGACATCCCTTCCTGCAGGAGGCAGCATTGTAGCACTGAGGTTAAAGTGTGGCTGATCTGTCAGCACTTCTACATCAGGAGGACAGCCACCCGCAGGGAGGGGGGCTTCCTGTGGGGGGGTGGCTGTGAGGGAGGCGTGGCCAGTGTGGGGCGTGTGTTGGGCGTGGTCAGTTGGGGCGTGGTCCGTGTGGGCGTGGTCAGTGTGGGCGTGGTCAGTGTGGGCGTGGTCTGGGGCGTGGTCAGTGTGGGCGTGGTCGGTTGGGGCGTGGTCAGTGTGGGCGTGGTCAGTGTGGGCGTGGTTGGGGCGTGGGTCCTGGTGCTTGCTCCTCTGGATGTGGCCCAGCAGGCGCATGGCCAGAAACACCAGCAGCACCTGCACCCCCAGCAGGACAGCGCCCCCAGTGGACAGGAGGCTGCTGTTGCGCTCCACCCAGCGGGACAGGCTCCCCAGACAGCCCCCCAGGAAGACCTGTGCCTGCGCAGAGAGCTCCCCCAGCCTGCGCGCCCCCGCCCCGCACTGGGAGTTCCACACCGTCCCGTTCTGCAGGGGGTCCAGGCAGCAGGAGGGGGGCACGCCACACGCCCGCACCCCCACAGCCGAGCAGTTAAAATACctgagagggagaagagagggagcatCCATCACACACCTTTACCTGTGAGCATCCATCACACCTTTACCTTcctggccccgccccgccccgctcaCATGTTGCTCTCCCAGTCCTGGCCccgccctggccccgccccgccccgctcaCATGGTGCTCTCCCAGTCCTGGCCccgccctggccccgccccgctCACATGTCCGGGTCGTCCTGGTACCGGGTCAGCGCCAGCAGCATGGCGGCGCGGAGGTGGGCGTGCACCTGGCCCGCGAGCGCGAAGGCCGCGATGCCCGCCAGCACCTGGGCGGCCAGGAGCGCCAGCAGGGCGGCGCTGAAGCCCCCGAGCAGGCAGGCGTTCTCCCTCAGCGTCCCCACGCAGCCCGACAGACAGAGCAGCGTCAGAGCCACGCCCGCGCACGCCACCGCCAGCATGGGGTCGGCGCCCAGATCGCCCAAACGCTCCTGGGAGAAGGACTCCTTCACCGCCAGGCCCCACAGCCCCACGGCCAGAGCCACCAAGCCCAGCACGCAGAACAGCAGGTTgcacaggaagaggagggactTCAGGAGGAAGTCACATGACCAGGCCGGCTCCCAGGCTCCGCCCTTCCCTGGTTTAGTCCAGCTGGCGGGAGGACTGGACAGTACCTTAGGAATGAGAGGACTGGTCTCATCGGCTCCTGCGCTGTCCTCTCTCGTCCTCCAGAAACCTGGGAACCTCCAAACGCTGAACTGCCTCATGCTCCCGAGCCAGCCCCGCGCTCATATGGTCCCGAGGCAGGAGAACTCCATGTCATGTGAGAGTCATGACGCTGAGATTAAGAGGCtccactgtGTCATCCGCGTCCAGTCTCCCGAGGGCATGAGGAAGATCCCGTCCACCAAGCGCGAAACGGCGGCCGCTTTCCTCCACAAGGTTGCTAAGGAGTTTGGCTTCAGCTCCAACGGGTTCTCCATATATCTGAACCGCAACAAGACTGGAGAGATCCTGTCCCAGAACAAGACCCTCAGCCTGCTTAAGAtcaagcacgGGGACATGCTCTATCTGTTTCCCTCGGGAACGCCCGGGCCGTCAGGTGAGCTGATGGACGTGACCGGCCCCCACACCTCCTCTGCGATACCGTCAACATCGTCTTCGTCTGCCgcgtcatcctcctcctcctcggccgCCGCCTCTTCGTCCTCCATGCCCCGCTCGCAGTCCGCGCCTCAGATCGCCGAGGACGACATCGACCAGTACCTGGCCAAGCAAGAGGGGAAGATCTACAGGAACAGAGACCCccagctGTGTCGACATGGTCCAATGGGGAAGTGTGTCCACTGCGTTCCGTTGGAGCCGTTCGACGAGGACTACCTGAACCACCTGGATCCTCCCGTCAAACACATGTCATTCCACGCTTACATCCGCAAGCTGACGGGCGGCGCTGACAAaGGGAAGTTTGTGGCTCTGGAGAACATCAGCTGTAAGATCAAGTCGGGCTGTGAGGGACACCCACCCTGGCCTGAGGGCATCTGCACCAAGTGCCAACCCAGCGCCATCACACTGAACCGCCAGAAATACAGGCACGTGGACAACATCATGTTTGAGAACAACACCATCGCCGACCGCTTCCTGGACTTCTGGAGGAAGACGGGCAGCCAGCGCATGGGCTACCTGTACGGGCGCTACACGGAGCACAAGGACATCCCGCTGGCCGTGCGCGCAGAGGTGGCAGCCATCTACGAGCCCCCACAGATCGGCACTCAGAACAGCCTGGAGTTGGTGGACGATCCAAAGGCTGCAGCTGTGGAGGAGATCGCAGCGAAACTGGGCCTTCGCCAGgtgGGCTGGATCTTCACAGACCTGCTCTCCGAAGACACCAGGATAGGAACGGTGCGCTACACCAGAAACAAGGACTCTTACTTCCTGAGCGCGGAAGAGTGCATCACAGCCGGAGACTTTCAGAACCACCAGCCCAACCCCTGCCGGCTCTCGCCCGACGGACACTTCGGATCCAAGTTCGTCACCGTGGTAGCAACAGGGGGTCCCGATAACCAGGTGCACTTTGAGGGGTACCAGGTGTCCAATCAGTGCATGGCGCTGGTGCGGGACGAGTGCCTGCTCCCGTGCCGGGACGCCCCGGAGCTGGGGTACGCCAAGGAGTCGAGCACCGAGCAGTACGTCCCAGACGTGTTCTACAAGGACAGAGACAAATTTGGCAATGACATCACATACCTGGCGCGCCCCCTGCCTGTGGAGTATCTCATTATCGACATCACCACCACCTTCCCTAAAGACCCGGCCCACACCTTCATCTCCACCCTGCGCTTCCCCATCGAGAACCGGGACGTGCTGGGAGACACACAGgatttCCACAGTTTAGCTTCATACCTGTCACAGAGCTCATCGTCTGTGTTCCTGGACATCGTGTCAGACTTCCACCTGCTGCTCTTCCTGGTCACCAACGATGTCATGCCCCTGAAGGACAGTATCGGGCTCCTGCTGGAGGCGGTGAAGACCTCAGACGAGGAGCTGGCGCAGACCTGGAAGAAGTCTGAAGAGTGGGCGACCATCGAGCAGCtgtgtggcACGGTGGGCGGGCAGCCGTCCGGCCCTCAGGAGTACGGTGCGATGGGAGGCCCGTCCGTCCCTGCGTCCTCCTCGGCCATGTGGGCGTGCGTGCACTGCACCTTCATGAACCAGCCCGGGACGGAGCTCTGTGAGATGTGCAGCCTGCCTCGGACCtag

Transcript

AAFF_T00254920

Protein

KAJ8377647.1

MFDITTILSIRGAYQCSVIMDSETIEIAALGRPLHPGMLYDRRSDTFIPGVSLWDGAAIEKDLSVKPQPRTSFNFTASDSFSEKSSLLDVSASLKASFLGGLVEVGGSASYLKDRESSMLQCRVTMQYKQTTQFKQLTMTQLGHVTYPEVFDQQTATHVVTAVLYGAEAFMVFDQTASVEEDKQDIQGNLDIMVKVIPTIEISGSGKVVMTDEEKRKVEKFSCTFHGDFILEQNPSTYEEAVLVYKGLPKLLGEKGENVVPVRVWLYPLKSLDSKAARLEREIREEQVSCVEDVMEQLHEAEMRANSLTNQCEAIKVTDIIDKMTKFQRKLRDYTVPLQQNLGRVLIAIRAGTEEEQKLADILKFHEESSFTQTKMNKWLDEKESEIGVLRAYIDLLQNVPIVPPGPELNTVIFDPQNGFVFMLTFTSLKYEEPYLSNLSECLALAEFRRMEDISVAHQHSFKEEALPCEGVDTVTLRLPTLNPNVLQYRVEHREVQGVAQGGAQGGAQGGAQGGAQAQGGAQGDAEIGAAWTITDTPGNQTELTVSGLRPNTQYQVRLSLVTAEGTSQPGSVIQIHTKDKANLHQATSLQLYSSRPPPGYQPPALQQPASTRPPAFSSLAGFLQATGRSWPQHQSQERRGGGWGLEGYKSPWGPGRWPRASIASQETTPTPRETTPTPRETTPTPAIQPEDRQRRGHSANLKLPPEQDKVEIGGRGRENERCGTVGLNRHGRFVLIIFSESEDYGIWVVFTDPPQAALMKYRSKSVFRAIADEELFNRITVSLLSWDSPPAMNLEAPKPEVKSATRVTGGPATPRKGPPKFKQRQTRQFKSKPPKKGVQGFGDDIPGMEGLGTDITVICPWEAFNHLELHELAQLLEYSSLTQHFEFVFEFVFEFEFEFEFEFEFEFEFEFEFEFEFEFDPLMNPAPQVCQTLYVLQVYGASGGECAPTLPDPSHAQSGGMCHAHEREDCTWRDPQTGRDWDVLCLGPESQELKVQRMRHQHFFFVVWAAQEAKPHLCIDEQKRPTPVRRRLSLTHASRGRSTPMGGGPTSGMKSRSLEEFPCGRHKWVSRLEAPGGSAVRPDPTSRLINATRDVSFLRSDARCRRNVSDLSSVTPRWKAADTVFASLSFNLNFWRQVIGVDVIEEGGQDRSLGTPFLRRRNLLRCPLPVVRVKLRFRTSSMIILTMCLSGSRRSSLQPAPGEQWVNNRFDAGVDKTLKDLEGDAEQRDGMVLGPSRVGFLEEDDEGLEGIGQLFDDTDLTGGEPFGVQLQYSGLEASGASPTGSPPRLLPSTSPDLLTPYTNVRALRSADKGLLTTRKSNLKSRGGRAFAVAAPDLWNSIPMSIRFAPSIESFKSKLKTHLHALQKLWLHFRRIGSLKISVHTGQESSSSRRENLPAILSTHLIRDIPSCRRQHCSTEVKVWLICQHFYIRRTATRREGGFLWGGGCEGGVASVGRVLGVVSWGVVRVGVVSVGVVSVGVVWGVVSVGVVGWGVVSVGVVSVGVVGAWVLVLAPLDVAQQAHGQKHQQHLHPQQDSAPSGQEAAVALHPAGQAPQTAPQEDLCLRRELPQPARPRPALGVPHRPVLQGVQAAGGGHATRPHPHSRAVKIPEREKRGSIHHTPLPVSIHHTFTFLAPPRPAHMLLSQSWPRPGPAPPRSHGALPVLAPPWPRPAHMSGSSWYRVSASSMAARRWACTWPASAKAAMPASTWAARSASRAALKPPSRQAFSLSVPTQPDRQSSVRATPAHATASMGSAPRSPKRSWEKDSFTARPHSPTARATKPSTQNSRLHRKRRDFRRKSHDQAGSQAPPFPGLVQLAGGLDSTLGMRGLVSSAPALSSLVLQKPGNLQTLNCLMLPSQPRAHMVPRQENSMSCESHDAEIKRLHCVIRVQSPEGMRKIPSTKRETAAAFLHKVAKEFGFSSNGFSIYLNRNKTGEILSQNKTLSLLKIKHGDMLYLFPSGTPGPSGELMDVTGPHTSSAIPSTSSSSAASSSSSSAAASSSSMPRSQSAPQIAEDDIDQYLAKQEGKIYRNRDPQLCRHGPMGKCVHCVPLEPFDEDYLNHLDPPVKHMSFHAYIRKLTGGADKGKFVALENISCKIKSGCEGHPPWPEGICTKCQPSAITLNRQKYRHVDNIMFENNTIADRFLDFWRKTGSQRMGYLYGRYTEHKDIPLAVRAEVAAIYEPPQIGTQNSLELVDDPKAAAVEEIAAKLGLRQVGWIFTDLLSEDTRIGTVRYTRNKDSYFLSAEECITAGDFQNHQPNPCRLSPDGHFGSKFVTVVATGGPDNQVHFEGYQVSNQCMALVRDECLLPCRDAPELGYAKESSTEQYVPDVFYKDRDKFGNDITYLARPLPVEYLIIDITTTFPKDPAHTFISTLRFPIENRDVLGDTQDFHSLASYLSQSSSSVFLDIVSDFHLLLFLVTNDVMPLKDSIGLLLEAVKTSDEELAQTWKKSEEWATIEQLCGTVGGQPSGPQEYGAMGGPSVPASSSAMWACVHCTFMNQPGTELCEMCSLPRT

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|ZnF\|NZF

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04868	PDE6_gamma	Retinal cGMP phosphodiesterase, gamma subunit	Family	Interproscan
PF05020	zf-NPL4	NPL4 family, putative zinc binding region	Family	Interproscan
PF05021	NPL4	NPL4 family	Family	Interproscan
PF11543	UN_NPL4	Nuclear pore localisation protein NPL4	Family	Interproscan
PF18078	Thioredoxin_11	Thioredoxin-like SNTX domain	Domain	Interproscan
PF21109	Stonustoxin_helical	Stonustoxin helical domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001876	Domain	Zinc finger, RanBP2-type	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR006952	Family	Retinal cGMP phosphodiesterase, gamma subunit	Interproscan
IPR007716	Domain	NPL4, zinc-binding putative	Interproscan
IPR007717	Domain	Nuclear pore localisation protein NPL4, C-terminal	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR016563	Family	Nuclear protein localization protein 4	Interproscan
IPR024682	Domain	Nuclear pore localisation protein Npl4, ubiquitin-like domain	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR036443	Homologous_superfamily	Zinc finger, RanBP2-type superfamily	Interproscan
IPR037030	Homologous_superfamily	Retinal cGMP phosphodiesterase, gamma subunit superfamily	Interproscan
IPR037518	Domain	MPN domain	Interproscan
IPR040581	Domain	SNTX, thioredoxin-like domain	Interproscan
IPR048997	Domain	Stonustoxin-like, helical domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12710	NUCLEAR PROTEIN LOCALIZATION 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004114	Molecular Function	3',5'-cyclic-nucleotide phosphodiesterase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0007601	Biological Process	visual perception	Interproscan
GO:0030553	Molecular Function	cGMP binding	Interproscan
GO:0031625	Molecular Function	ubiquitin protein ligase binding	Interproscan
GO:0043130	Molecular Function	ubiquitin binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-