Gene detail

Detailed information of KAJ8400965.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8400965.1	CORTACTIN AND DREBRIN	AAFF_1.1_unplaced_73	965918	1028509	-

Gene Structure

More details in Jbrowse Sequence

CDS

AAFF_T00389220

ATGGCCCATGTGCTGTTACTCCTCACAGCCCGTCCATGGATCCTCTGGGTCCAGgaggcggttcggtttgcctttgtcactgtcctGAATGACAGCCCATACCAAGGAGGGGTGTTCTTCCTGACGATTCACTTCCCCACAGATTACCCCTTCAAACCGCCAAAGGTTGCATTCACGACAAAAATCTACCACCCCAATATCAACAGCAATGGCAGCATTTGTCTGGACATTCTGAGGTCGCAGTGGTCCCCTGCTCTCACGGTATCTAAAGTGCTGTTGTCCATCTGCTCCCTGCTGTGTGACCCGAACCCAGATGACCCGCTGGTACCAGAGATCGCACACACCTACAAAGCAGACAGGGAAAATGACTACAAAGGACCGAACGAAAGGGCGGTGGAAACCATGAGGTGGTGGACGAGAAATCCAGCACGAACTGagccactcctagccgactctggcgcggctggtggaattgaaccccagtcgcagtggccagcgtcgaacgttGCACATCTTTGTTTCAAGAGCGAGCTCGAGTCTGCCTGCACAGACAGGAACCTCTCTGGTGTGGGCTACCTGGAGCAGGTCGTGACTGAGAGGATGCGCTTTGTTAAGAAGACGTGTCAGAGTGAGCTGAGGAACGGGCCTGATCGGGCCGTCTCCACGGCCGGGCCATCTTGTCCTGTGTCCACAACCACCTCGATCCTTTTGGCCTTGTTCACTTATGAGGGGAACAGCAACGACGTCCGATTGGCTGAGAAGGGAGATGGGGGCCTGGAGGAGATGGTGGAGGAGCTGAACAGCGGGAAAGTGATGTACGCTTTCTGTCGTGTGCTGGACCCCAACTCTGGCCTGTCCAAATACGTCCTCATAAACTGGACTGGTGAAGGGGTGAAAGACTCCAGGAAAGGGCTGTGTGCCAATCACGTCAGCTCCATGGCCACTTTCCTAAAGGGAGCCCATGTGACCATCAACGCCCGCGGCGATGAGGATGTGGAGCCTGAGGTCATCATGGACAAGGTGGCCAAGGCCTCGGGGCCAACTACAGCTTCCACAAAGAGTCCAGCCGCTTCCGGGACTCCGGCCCCCAGGGGCCCGTGggcTTTCACGCTGGCCGTCCGGCCggaggagggggcggcggGGTTGGGCAGTGGGTTCCTGTCGGGCTCCACCGCAGGCTCTGTGTATCAGAAGACCAACGCCATGTCTGAGATCAAAAGGACCAACAAGGACAACTTCTGGGCGCAGGCCGAGaaaGACGAGGAGAAGCGCAGgcaggaggagagggtgagGCTGACCGAGGAGCGGCAGTACATGGAGAGTGAGAGGAAAGATCGGGAGGCGAAGGAGACGGTGCAGAGAGACAAGAGGGACAAGGAGAGAGCCAATCAGATCGACCAGCAGAAGAAgttccagcagcagcaggactCTGAGAGCAGAGACCAGGAGAGGCACCAGTGGGAGACGCAGGAGCAAGAGTTCCAGGCTTCACAGAAGAAAGGGTTCAAGCGTGGGGAATCTGTGGAGAAAGCCCAAGAGGCGGCCTCCCTGATCTCCCAGCGCTCGCTGAACCCCAGAGAGATGttcaagcagagagagagggggaggaccCCCGACAACAGAGACGCCCCCTCCAGCCCCCAgccagAGCCCAGTGTGGAAGAGCAGTCCCCGTCTGAGTTTGAGGAGCAGGAGGCAGCCCCCCCCGAGGAGGAATACGAAGggacgcggttcgaaacccgtctctgccagaccggccctggtcatcagcgattgggggcggcgtttggctgtccgccccagggggaaggggggagggtgagccggctcgggtccgccgtgaagcacggaaaaggagtctccagaaaGCAGCCacgccctcccccacccccccctgtcccggccccctccccctcccccaccccctcccctgtcctggccccctcccctgtccccgcccccgcccccgctgaAAATCTGTACGAAGCTGCCCCAGAGCCAGACAACATCTACGAGGAACCCCCCCAGGTGGAGGAGCAACAGAACACGTACGACTACCCTCCAGAGGAGACCGCAGACCGGGGCATCTGTGCCAGGGCTCTGTACGACTACCAggctgCCGACGACACGGAGATCTCCTTCGACCCCGACGAGATCATCACGGGCATCGAGATGATCGACGAGGGCTGGTGGCGCGGCTACAGCCCGGACGGGCGCTTCGGAATGTTCCCGGCCAATTACgcctacatccccacagcacagGAACACAGTGACCAGCGAGGCACAGAAGTGGACGCCCTCCAGCTGCTAATCAGCAGGGGATCAACTCCCATGCCCGTGACTCAAACCGGCAGTCGACCGTTTGGCTGGAATGACGTGCCACCGCCGTTTCTGGTTAACTCTTTCACGTCTGCGTGGGAGCAGCATGTCTGTCACTGCTGGCAGCAGATGAATGTCAGAATCCTGACTGACTTgacccaaccccacccccggCGGGACAGGGCCAACTGCGTCTCTCTGCTGCAGACTGCCGCTCACTGCCGCTCATCGTCGACGGATGACCTTAACCTAACAGACTCTGAGCTGCGACGGATAGGCTATAAGACTCAATGTcgtccaattataccctctatttctttcgattcgccctcccccacggaCAAGCTATTCCCCGAGAGCCGGGACAATGTGCTGAATTGTGAAAAGAGCCCGCTGGGACTGAGCCGCGCTCCGCCGTTATGGAATGCCAGGCTCTGA

Transcript

AAFF_T00389220

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E2\|UBC\|UBC
Ubiquitin Family	UBD\|Other\|SH3
Ubiquitin Family	UBD\|UBC-like\|UBC
Ubiquitin Family	E2\|UEV\|UEV

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00018	SH3_1	SH3 domain	Domain	Interproscan
PF00179	UQ_con	Ubiquitin-conjugating enzyme	Domain	Interproscan
PF00241	Cofilin_ADF	Cofilin/tropomyosin-type actin-binding protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000608	Domain	Ubiquitin-conjugating enzyme E2	Interproscan
IPR001452	Domain	SH3 domain	Interproscan
IPR002108	Domain	Actin-depolymerising factor homology domain	Interproscan
IPR016135	Homologous_superfamily	Ubiquitin-conjugating enzyme/RWD-like	Interproscan
IPR023313	Active_site	Ubiquitin-conjugating enzyme, active site	Interproscan
IPR029006	Homologous_superfamily	ADF-H/Gelsolin-like domain superfamily	Interproscan
IPR035717	Domain	Drebrin-like protein, SH3 domain	Interproscan
IPR036028	Homologous_superfamily	SH3-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10829	CORTACTIN AND DREBRIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003779	Molecular Function	actin binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005884	Cellular Component	actin filament	Interproscan
GO:0014069	Cellular Component	postsynaptic density	Interproscan
GO:0030027	Cellular Component	lamellipodium	Interproscan
GO:0030425	Cellular Component	dendrite	Interproscan
GO:0030427	Cellular Component	site of polarized growth	Interproscan
GO:0030833	Biological Process	regulation of actin filament polymerization	Interproscan
GO:0030864	Cellular Component	cortical actin cytoskeleton	Interproscan
GO:0045211	Cellular Component	postsynaptic membrane	Interproscan
GO:0045773	Biological Process	positive regulation of axon extension	Interproscan
GO:0048812	Biological Process	neuron projection morphogenesis	Interproscan
GO:0051015	Molecular Function	actin filament binding	Interproscan
GO:0061003	Biological Process	positive regulation of dendritic spine morphogenesis	Interproscan
GO:0098974	Biological Process	postsynaptic actin cytoskeleton organization	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-