| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| KAJ8403430.1 | COLLAGEN ALPHA | AAFF_1.1_unplaced_58 | 2675484 | 2726001 | - |
| CDS | |||||
| AAFF_T00352020 | |||||
| Transcript |
| AAFF_T00352020 |
| Protein |
| KAJ8403430.1 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01391 | Collagen | Collagen triple helix repeat (20 copies) | Repeat | Interproscan |
| PF01392 | Fz | Fz domain | Domain | Interproscan |
| PF06121 | DUF959 | Domain of Unknown Function (DUF959) | Domain | Interproscan |
| PF06482 | Endostatin | Collagenase NC10 and Endostatin | Domain | Interproscan |
| PF20010 | Collagen_trimer | Collagen trimerization domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR008160 | Repeat | Collagen triple helix repeat | Interproscan |
| IPR010363 | Domain | Domain of unknown function DUF959, collagen XVIII, N-terminal | Interproscan |
| IPR010515 | Domain | Collagenase NC10/endostatin | Interproscan |
| IPR013320 | Homologous_superfamily | Concanavalin A-like lectin/glucanase domain superfamily | Interproscan |
| IPR016186 | Homologous_superfamily | C-type lectin-like/link domain superfamily | Interproscan |
| IPR016187 | Homologous_superfamily | C-type lectin fold | Interproscan |
| IPR020067 | Domain | Frizzled domain | Interproscan |
| IPR035523 | Domain | Collagen alpha-1(XVIII) chain, frizzled domain | Interproscan |
| IPR036790 | Homologous_superfamily | Frizzled cysteine-rich domain superfamily | Interproscan |
| IPR045463 | Domain | Collagen type XV/XVIII, trimerization domain | Interproscan |
| IPR048287 | Domain | Thrombospondin-like, N-terminal domain | Interproscan |
| IPR050149 | Family | Collagen superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24023 | COLLAGEN ALPHA | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0005615 | Cellular Component | extracellular space | Interproscan |
| GO:0030020 | Molecular Function | extracellular matrix structural constituent conferring tensile strength | Interproscan |
| GO:0030198 | Biological Process | extracellular matrix organization | Interproscan |
| GO:0031012 | Cellular Component | extracellular matrix | Interproscan |
| GO:0062023 | Cellular Component | collagen-containing extracellular matrix | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-Yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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