Gene detail

Detailed information of KAJ8407662.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8407662.1	BETA-MANNOSIDASE	AAFF_1.1_unplaced_38	6027914	6059675	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

AAFF_T00275190

GCCCGGctgcatgggtgtgtgtagtTCCGGCAGGAGCGGACATCTTGTGCAACTCTGCGGAGAAGACgagacagcgagagagggaCAGCACGGAGGAGCTAGAGCAGCACAAACGTCAGACAGTTAGCTAGGCGGTCAGAGCGCAGGAATTTAAAACCCACTGATCCTCGGTCCGTTTTGATCAACATTGACTGAGTTTCACGAGGTGAAAGTGTGGCAGTtatttagctagcaagctatacggttttttttatttacctgGAGATTTCAACTCGGAACAGATTGCCCCGGGTAACCCACAGAACGACAGAATGGCGCTGAAGCGAATTCATAAGGAGCTCAACGACTTGGCTCGTGACCCACCAGCACAATGTTCCGCAGGCCCAGTCGGGGATGACATGTTTCACTGGCAAGCTACAATCATgggccctAACGACAGTCCATATCAGGGTGGGGTTTTCTTCTTGACAATTCACTTCCCCACAGACTACCCTTTCAAACCACCCAAGGTTGCATTTACCACAAGAATCTATCACCCTAATATTAACAGTAATGGCAGCATCTGTCTCGATATTCTAAGATCACAGTGGTCGCCTGCATTAACTATTTCTAAAGTTCTTTTGTCCATTTGTTCACTGTTATGTGATCCAAACCCGGACGACCCGCTAGTGCCAGAGATCGCACGCATCTACAAAACAGATAACGAAAAGTACAACAGAATAGCGCGGGAATGGACTCAGAACAAGCACGTCACCTACACAATACTGCGTTCCATATCTGAGGTGCGAGAAAACACCGGGCGCTATCGCGTGCGTCTAAACGCCGCAGCAGCGGAGGTGCCTGGCTGTGTACACACAGCACTATTGAAACAAGGACTTATTCAGGACCCTTACTACAGGTTCAATGACTTGGCCTACAGGTGGATTTCTCTTGACAATTGGACATACACAACCACATTCTCAGTGCCAGCCGAGATCAGgAACAAGCAGACGGTGCGTTTGGTGTTCGAGGGCGTGGACACGGTTTCCTCCATCTCCCTCAATGGCGTGGCCGTGGGCAAGACGGACAACATGTTCCGCAGATACGACTTTGAGGTGCGCGGGCTGCTCAGGGAGCGGGGGAACGTCCTCGCGCTCAGCCTCTCGTCCGCCAAAGGCGAATGCCACGTCAACTTCGTCAGGAAGGCCCAGAGCTCCTTCAGCTGGGACTGGGGGCCGTCCTTCCCCACCCTGGGGCTCTGGAGGGACGTGCGATTGGACGCCTACGACGCGCTGCGGCTGCTGTATCTCACCACCACGCCAGCCCAAGATGCGCGACTCTCCCAGTGGAGCGTTGAGGTGGAGCTGCACTTGGACGCATTGGTGGCAGTGGTGGGATACGTGACTCTACTCCTTCCTGAATTAGCCACGCAACAAACCTTCCAGGCCTCCCTGCCTGCAGGACAGAGCAGGAACACATTCACCCTCCCTGTCAACAAGAGTGCTCGTGTGGACCTGTGGTGGCCCAGAGGACAGGGCCAGCAGAGGCAGTACCGCCTGAGCGTGCAGGTGAAGCTGGACGGAGGACTGGCCATCGACACCAAAGCCCTGGTGTCTTTCCGCACGGTGGAGCTGGTCCAGGAGCCCATCGCCGGGTCCCCGGGTCTGAGCTTCTACTTCAGGATCAACGGGCGGCCCGTCTTCCTCAAGGGCTCCAACTGGATCCCGGCCCACGCATTCCAGGACCAGGCCACGCCCGAAGGGCTGAGGAACCTCCTGCAGTCGGCCGCGGACGCCAACATGAACGCGCTGAGAGTCTGGGGGGGCGGAGTCTACGAGCAGGAGCTCTTCTACAGCCTGTGCGACGAGCTGGGGATCACGATCTGGCAGGACTTCATGTTCGCCTGCGCCCTGTACCCCACGGACTCGGACTTCATAGAGACTGTGAGAGAGGAGGTGGCCCACCAGGTGAGGAGGCTGAAGTCCCACCCCTCCATCATCGTGTGGAGCGGCAACAACGAGAACGAGGCGGCCATCGCCGCCGACTGGTTCAGCATCCCCGCCTCCCAGCGACCCCGATACCTGAAAGACTACGTGGCGCTCTACGTCCGCAACATCAGGGACATTGTTCAAGGGGGTGAGTAGCCATCGATTCATCGCTTTTTATCCTTACTCCCACAGCAACACCGGCAGCTGTTGACAGCAACGTGTGACTAATGTGTGGTCGTTTCCTGACCGGTTGTTGAAATTGGCGATTTTCTAAGAGGCAAGCTAATTGTCCGAGgtcagcgaactctgcttccttcgagacggaattcgcccacccacgttctggagattcccttacacgcttctcagcgagttcatgccgactcaccctccccctccccctccccctggggcggaccgccaaatgccgcccccgatcggggtcaTTGTCAGTCAGCGAGCGTTTTAAACGCCAGTGAGACTAGGAGAGCCTGACGTAATGAGGCCCTGCCAGATAATCCTGTGTGGAAGCCTGGTGCGTTTTTCACTCACTTTGCTCGACGTGTAATGTGTTATAGTCGCCGTGGTGATGTGAAATGAGATCTCTGCAAAGGTGGGATTTTCTTTCCAATAGGCTGAGGTTATTGattgattatgattattgttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggtgtgggtgtgggtgtgggtgtgtgatctTTGTTGGCATCTTGGCCCTTTGGTTTAAAATCTCTACCTCACTGCCTGTAACCACCTGATGAAAGGTTTAAGAATGGCTGTTTGTGTCCACCCCTACAGGCCTCAGATCAGTATTATCAGAGATTCAGCCATTCTTGAATTGTGAATGAGCTTCAGTACCTCGGCTACCTGAAGAGCTACTTTACGCTTGGAAAAAGTATGCACGCCAATATTGTTCTGTCCCTTAAGAGCCACG

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E2\|UBC\|UBC
Ubiquitin Family	UBD\|UBC-like\|UBC
Ubiquitin Family	E2\|UEV\|UEV

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00179	UQ_con	Ubiquitin-conjugating enzyme	Domain	Interproscan
PF02836	Glyco_hydro_2_C	Glycosyl hydrolases family 2, TIM barrel domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000608	Domain	Ubiquitin-conjugating enzyme E2	Interproscan
IPR006103	Domain	Glycoside hydrolase family 2, catalytic domain	Interproscan
IPR008979	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR016135	Homologous_superfamily	Ubiquitin-conjugating enzyme/RWD-like	Interproscan
IPR017853	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR023313	Active_site	Ubiquitin-conjugating enzyme, active site	Interproscan
IPR036156	Homologous_superfamily	Beta-Galactosidase/glucuronidase domain superfamily	Interproscan
IPR050887	Family	Beta-mannosidase glycosyl hydrolases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43730	BETA-MANNOSIDASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0004567	Molecular Function	beta-mannosidase activity	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0006516	Biological Process	glycoprotein catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-