Gene detail

Detailed information of KAK2142215.1 in Paralvinella palmiformis Gene info

Gene ID	Annotation	Contig	Start	End	Strand
KAK2142215.1	REELIN	ctg984_pilon	66110	110914	+

Gene Structure

More details in Jbrowse Sequence

CDS

KAK2142215.1

ATGGTGTTATTCCTGTTGCTGGTTGTCATGGTGTTGTGTACACCGGCTGTACACGGTAATGGCGACAGTTTCATGTCGCCTTTCTTTATGTACTGTAACAACGACCTGTCGCTGGATGACCAGTCTGACGTGGAATCTGAAATATCCCTCACCCTGTCGATAGAAGGTGATCCAGAATACTACGAGCCTGGCCATGTTTATAAAATGAGCATCACATCGAACCAAGATTTCGACGGCTTCCAGATAAACGCCGTCTTCGCCATGACACCCGGCGCGACGCCAACTGACGGCATGGCTTCGGGACCATTCTTCAGTGCTGCCCCCTATCTGCACCTACCGTCGACCGGTCCGAACCAGGCGGCGGGCCAACGACTGATGTGTTCGCGGCGAGTACACGCTCATTTCGGCTACCAACCGGAGCACGAATTACACTTCCTCTGGATGGCGCCACCGGAAGGCACGGGATGTATTAGCTTCAAAGGAACAGCCACACGAAATCAACAAATACTTTTCAACAGTGTAACCGTACTGCATCTCTGTGAGGCAGGCACTAAAGTTGATTTGTCTACTCTGCACGAAGAAGGCATAATTCTGCGAGATGATTTTGACTCTTCGAAAGAGTTTGATGCCGAAATATGGAGAAGTTATCTTGGTGTAGAGATTAGCCAGGATTGTGGCCTCTTATTACAAGGGAAGGCTGCAGTTGCTTGTCAGAAGACTGGTACTCGTCAGCTGATAACTGTCCCGCTGAACCTCACCACAGCTTCAGTTGTACAGTTTGCTGTTGCCTCGGGAACGTGCAGATCATCCCCCGAAGGCGAAGAGATAACCATATCGTATAGCAGCGATGGCTGTACCAACTGGACGCAGATCAGCACCGTCGCTGTTCCAAGACAAAGGGAGGCCGAAATACGTATTCTACATCTGCCACTGAAGGCCAGAAGGACCGACGTCTGCATAAAATGGGAAGAAGTACTCGGTTCCAATTCCAGCGAATACGACGGCTGTTGGGCGCTGGATAATGTTGCCGTCGTGAATATGGCTAATCCGCCAATCAGCTTCGAGGACGACTTTGATCCAATTAATCCAAATAATTGGCTCTTTTTCCCCGGTGCTCAGGTTCAGCACCAATGTCTCTCGGAGCAGAAGGCCATGGTTTTTGACGACGGTAAAGATGATCAGATTAAATCAGCCACCACTCGAGCTGTTAACCTAGAAGCAGGCCTGTCTACCGAAAATCACTTGATTGGTGAAAACTTTGAAATAAAGGATCATCTTGAAGGGTGGCTTGTTGACGGTGGAGGGGTCAGCACTGAGTGTTCAGACAAGGACAATAATTACCATTTGGTGTTCTCAGATAAGAGTAAGACCAGACGTCTGTGTACGCCATACATGGATCTGACACTGGCCGGAAATGTACGCTTCTGGTTTATGTTTGGAGATGCTAGCTGTTCAAAGGGTCTCCTGCCCACATCAAAGGTCTACGTGTATATAGAAGATAAACAAGGCCACAGCAGTAGTTTATATACTCTAGCACCTCAATCACACCAGGTATCCCGGGAGATATCGTTGTCTTTATCAGATACCAGCCTCATGACGGATGCCAGGATTTGCTGGACCCAGAAGACTCACCGTGGTGCTGACTGGGATGTCTGGACAGTCGACGATGTCTATATTCTAAATGCCATGCCAGAAGATCTGGAGTACTTCGTACAGTTTGACCTGACGCTGCACTGTGGAAAACCATCCGACAATATTAGTGTGGTGTTGGAATATTCAACAGATCATGGCCACCGCTGGGAACCACTTTATGAGAAATGTACAACCTTGAAGTGTTTTATCACCCTAGCAACGACAACCGCTTATTTCTATGGTGACCAGTACGATGGCTGCGACTCTGGTTTTCACGACCAGACCTGTCAGCTGCCAGATATCGTTCCACCAACATTTCTAATCGAAGACCTAGCCATCAGCTCATCAGACAGCTTCCTCGCCATCCACGGTCTGCTGGCGCTGGGCTATACGTGTGGCATCGTGGCCACAGGTAAGGCTCTGGTTTTCAGCGCCGAAGGCCCTCGTTACTTGGAAACCATTGACGTCAACACCACAGAAGCAATGTATCTACAGTACAGCATAAGGATGGGTAGTGATTCCGCAGTTGGACCATGTCCTTCACCAGATCATCCAGATGAGGTTCTCCTCCTACATAGTACGTGTGATGGTGGCATCACGTGGACTCTACTTCAGAAGCTGATAGCCGATGACTATACTCAACCAATGATGCTATCAGTTCCCTTACCTCCGGAGGTTCGAGGTACCATGTGTCGCTTCCTATGGTGGCAGCCGTTACATTCAGGTGAAGGTCGTGACGTGTGGGCAATAGATGACATATCGATCACCAGCACGATGTATAACACAATAGATATAATATTTGATCCGTCGGAAGACAATCAACACGCTCTGGAGATCCATCTTGGTGAGATCAATCCCTACTGTGGCAAACAGCAAGTACTCAGTTTCGCAGGTCCGCACCAAGAAGATGAGTCCCGCAGTTGGATGACGAGATCGATGCGTATTGGCCCGTCCTATATACTACAGTTTGATTTGGTCATGGGCTGCGACTACCTGTTCGTTCCGGACATCGACAACAAACTGTACCTGGAGTACTCGACAAACCACGGCATGACCTGGAGCCTGGTCCACAACGGTTGTTGGCCGCCACGTATGTGTGACGAGTACCACACGGCCAGCATCTATCACTCGTCGGAGTACCAGAGCTGGCGACGTGTGACCGTCATCCTGCCGCCGCATACTTGGTCCAGTACTGCCAGATTCCGACTGCGCCAACCTTATTGGAGCTACAGCGACAGCTGGGCCATAGATAATCTCTATGTTGGCCTACAATGTCCTGATATGTGTCACGGACACGGATATTGCAGACAGGCAAGATGTAGATGTGATCCTGGCTTCGGTGGGATTACGTGTCGACCAGAATCGAAGTTACCGTCGACGTTGAAGACCGACTTCTCGTTGATATCCCAGCTCCACGAAGATTGGCTGTACGTAGTGGGGGGTGAGCTGGCGGGAGCTAACCAGGGTTGCGGCACCATGTTGTCCGGAGAATCGCTGTACTTCTTCCAGACTGGACCTAGAAAGTTGGTCAGCCATAGCCTGAACACCACAGAAGCACAGTTCTTGGAGTTCTTCATACAACTCGGTGGAGAGAACGATATTCAGTGTTTTGGCATTGAAACCAGAGAGGAGAACATCCTGGTACAGTACAGCACAAATGGTGGTATCACATGGCATCTTCTGAAGGAGCTTCAAGGTCCCGATTACATAAGGCCAAGCAACATTGGGCTGTCAGAACACTGGGTTGCGGGAACGTCGGGCTGTGATAACACCGGATTATCAGAACCTAGGGCTATCCTAACATCGGGCTGCGATAATATTGAGCTGCCGGAATATTGGGCTGCTAGAAGTTTGTCTGTAGTAACACTGAGCTATCGAAACATCCGACATTCGGAACATTTGGTGGTCGGTGATAATATTTACAGCGGCTGGGACGGCAGCAGCGTGGAACGGGAAGGGCTCCTGTCCCGAAGAGGATATTCCTATTCTTTGGCGGCAGTTGCGACCTTTGAAACCAGCTTTGATATGAGAATCGACGTCTGGTTGTTCGATTGGGGGTGGCGTGGGGGTGGTGGTGATGGGGGTGGTCCTCCCATCCATCACTCCTTCGTCGGCATGCCGATGATGAACGCAACCGAATCGGCTCGCGGTTGGACAATGAACAGCTCGGAGTTGTCGCCGCTCCCGATCAGATCGACGTTATCGATAGCACTCAGTTCCTTCATTGTTGGCCTAATCTGCCTCGTTTCGGTTTTGGGGAACATCGCCGTCATCTACGCTATCGCTAATACGTACGAAATGCGCGAAAAGGCGTCCAACGTTTTCCTCATCAATCTCAGCATCACCGACTTGAGCAGCGCCCTCTTCGTCATGGTTTCGGCATTCGTCTGTTTGGCATTCGACATTCGCCAGGTTAATGCCGCCTGGTGCAATTGCATGTGCGCCATGAACTATTGCCTCATCATAGTGTCCATGATGACGCTGGCCCTGATCAGCGTCGACAGATTGGTGTCGGTGCTGTGGCCGTTCCGGTATTACGGCCTGATCACGAAGCGCCGCGTGGTGGCCGCCATCGCGTTCACGTGGATCCAGGGCTCCGCGTTCGGCATAGCGCCGGCCTGGGAGGGCTGGATCCACTACGACTATTGGGAGGCGATCTGCGCCATTCAGTGGCACCGCCGACCCGAAAGTGGGCCCGTCACCTACGTGATCATCGCCTTCTCGCTCTGCTTCGCCCTGCCCGCCCTGACGATGCTCATCTGCTACACGGTAACGATCACCTACGCGAAGAAGAGCGCCCGAAACATGATCCCGACGCGCCCGCCGTCCGGCTCACACGGCAAGAAGGCGGAGGGCCAAGATTACGATCTTGGCCTGAAGATCATGACGAGTCTGTTGGTCGTTGTAGCCGCCTTCTTCGTCTGTCTGATGCCGTTCAGCGTCACCAAGCTGCTGAAGGTGCTGACACACGATCCGCAATACGTGCCGCCTTACGTCAACCTCTGGGCGGCCTTCTTCGGCTATCTCTCGAGCATGGTGAATCCTTTCATCTACGGCATCCTGCGAGCCGACTTTCAGCGAGCGTACAGGCTGCTCTTCCGGAGGATGCTGTCGAGAACGAGCCTGTATCTGATGGAGACGATGACGCCGCCAAAATACGTCAGCGCGCTCGATGCCAACTCCAACTCGAAGAAGACGGACTCCACCGAGGAGGAGACGGTCTTCGCTGGGAAATGTGACGCTAAGCCGACGAGAAGGGCGCTCGCTGATGGCATGATCGTTCTGAGAATAGATTCCCTAAAGGATGGTTGCATTCCACGAGAGAGCTGTTATCCGCATGATATATGTCCCCTACCAAACCCATTTCCAGGTCTCTCACCACGCCACGCTACTGTCGCCTTTGAACAGACCGTAGCGGACAGTGCTGACTCTCAGCCTATCGATTTGCGGCTATTTGTAGCTCATAAAAGGGAGAATCCCCGGGCTGTCGCTTATTCGGCACAGCCTCTATGTTGGAGTGGTATAGTTCATATCGACTTGCCTAAACGAGCATCAGCCGAGTGTATCCAGTTCCGGTGGTGGCAGCCTAAGCATTCCGGTTTGAATGCTGACCAATGGGCAATCGATCAGATCCAGCTATCGGACTATCAGGATCTGACCCTTCTTCAGGATGACTTCGAGCTTGGGGACGATCCGAACGTTGTCTATGGTGATCTATGGCAATTGTTGACTGAGCCGATGTATACACCTTACTGTGGCTCTACCGATGACACGCTGATGTTCGGTAACCTGGCCAGTGACAAGATAGCGATGACGAAGGATCTACGTCTTTCGGTCGGCGATATGATACAATTTACGATCAATGTTGGCTGTAGTAAGACCTTTTCAGCAGTTAATCCCGTATTGTTAGAGTATAGCCATGACTCAGGCCTGACGTGGATGCTATTGGAGGAGCCGTGTTACATGTCCAATGTCTGTCACAATAAGTTCACTCAGGGAAGCATCTATTACACCGGCCCATATGGAGAATGGAAAGAAGTTACTCTGACCATAACCGAAGCCGTCGCCAATCGACGTGTAAATCTACGTTGGGTTCAGCCTGGTGGCATAATGTCTAGTTTCGGACTGAACGATGTTTATATTGGCCCACCGTGTCCTTCTATGTGCAATGGCCATGGTTCGTGTTCACAGGGAAAGTGTCACTGTCATCAAGGTTATGGCGGTAAGGAATGCCTGCCTCTATTGGATCAACCATTCGGAATGGTCGACAGATTTGACGACAGCAATCTGCCCAGTGATTTATGGGATGGCATCATGGGTGCTTATCTTGGATTAGGTTGTGGGGTCATTGGATCTGGAAACTCATTGTATTTCCATGGCGATGGACCGAGAGAAGCCAAAACCATTCCTTTAAATACGACGAGTATAAGATCATTAAGGTCGAACTTTTATGACTTGAGGGCTAAACAAAATGTTTATTTCAATCAAAGGGCGAAAAAGCGGAGGATAGTTATGTGCCACAGCTTTGTTTACAAGCGTCCTGACCAGTTGACAGGCAAAATGTCAGATTCCGACGAATGTTTTGACATTCTCAGGGATATCAAGCCCTCCAATTTAGAACCACTCGCCAAAAAGGTCACAGACAGTTTTAATTGTGAGGAATTAGTTGCAGCAAGTGCATACATGAGGACCAAGAGCAGCCACCTGTTGGGAGGATAG

Transcript

Protein

KAK2142215.1

MVLFLLLVVMVLCTPAVHGNGDSFMSPFFMYCNNDLSLDDQSDVESEISLTLSIEGDPEYYEPGHVYKMSITSNQDFDGFQINAVFAMTPGATPTDGMASGPFFSAAPYLHLPSTGPNQAAGQRLMCSRRVHAHFGYQPEHELHFLWMAPPEGTGCISFKGTATRNQQILFNSVTVLHLCEAGTKVDLSTLHEEGIILRDDFDSSKEFDAEIWRSYLGVEISQDCGLLLQGKAAVACQKTGTRQLITVPLNLTTASVVQFAVASGTCRSSPEGEEITISYSSDGCTNWTQISTVAVPRQREAEIRILHLPLKARRTDVCIKWEEVLGSNSSEYDGCWALDNVAVVNMANPPISFEDDFDPINPNNWLFFPGAQVQHQCLSEQKAMVFDDGKDDQIKSATTRAVNLEAGLSTENHLIGENFEIKDHLEGWLVDGGGVSTECSDKDNNYHLVFSDKSKTRRLCTPYMDLTLAGNVRFWFMFGDASCSKGLLPTSKVYVYIEDKQGHSSSLYTLAPQSHQVSREISLSLSDTSLMTDARICWTQKTHRGADWDVWTVDDVYILNAMPEDLEYFVQFDLTLHCGKPSDNISVVLEYSTDHGHRWEPLYEKCTTLKCFITLATTTAYFYGDQYDGCDSGFHDQTCQLPDIVPPTFLIEDLAISSSDSFLAIHGLLALGYTCGIVATGKALVFSAEGPRYLETIDVNTTEAMYLQYSIRMGSDSAVGPCPSPDHPDEVLLLHSTCDGGITWTLLQKLIADDYTQPMMLSVPLPPEVRGTMCRFLWWQPLHSGEGRDVWAIDDISITSTMYNTIDIIFDPSEDNQHALEIHLGEINPYCGKQQVLSFAGPHQEDESRSWMTRSMRIGPSYILQFDLVMGCDYLFVPDIDNKLYLEYSTNHGMTWSLVHNGCWPPRMCDEYHTASIYHSSEYQSWRRVTVILPPHTWSSTARFRLRQPYWSYSDSWAIDNLYVGLQCPDMCHGHGYCRQARCRCDPGFGGITCRPESKLPSTLKTDFSLISQLHEDWLYVVGGELAGANQGCGTMLSGESLYFFQTGPRKLVSHSLNTTEAQFLEFFIQLGGENDIQCFGIETREENILVQYSTNGGITWHLLKELQGPDYIRPSNIGLSEHWVAGTSGCDNTGLSEPRAILTSGCDNIELPEYWAARSLSVVTLSYRNIRHSEHLVVGDNIYSGWDGSSVEREGLLSRRGYSYSLAAVATFETSFDMRIDVWLFDWGWRGGGGDGGGPPIHHSFVGMPMMNATESARGWTMNSSELSPLPIRSTLSIALSSFIVGLICLVSVLGNIAVIYAIANTYEMREKASNVFLINLSITDLSSALFVMVSAFVCLAFDIRQVNAAWCNCMCAMNYCLIIVSMMTLALISVDRLVSVLWPFRYYGLITKRRVVAAIAFTWIQGSAFGIAPAWEGWIHYDYWEAICAIQWHRRPESGPVTYVIIAFSLCFALPALTMLICYTVTITYAKKSARNMIPTRPPSGSHGKKAEGQDYDLGLKIMTSLLVVVAAFFVCLMPFSVTKLLKVLTHDPQYVPPYVNLWAAFFGYLSSMVNPFIYGILRADFQRAYRLLFRRMLSRTSLYLMETMTPPKYVSALDANSNSKKTDSTEEETVFAGKCDAKPTRRALADGMIVLRIDSLKDGCIPRESCYPHDICPLPNPFPGLSPRHATVAFEQTVADSADSQPIDLRLFVAHKRENPRAVAYSAQPLCWSGIVHIDLPKRASAECIQFRWWQPKHSGLNADQWAIDQIQLSDYQDLTLLQDDFELGDDPNVVYGDLWQLLTEPMYTPYCGSTDDTLMFGNLASDKIAMTKDLRLSVGDMIQFTINVGCSKTFSAVNPVLLEYSHDSGLTWMLLEEPCYMSNVCHNKFTQGSIYYTGPYGEWKEVTLTITEAVANRRVNLRWVQPGGIMSSFGLNDVYIGPPCPSMCNGHGSCSQGKCHCHQGYGGKECLPLLDQPFGMVDRFDDSNLPSDLWDGIMGAYLGLGCGVIGSGNSLYFHGDGPREAKTIPLNTTSIRSLRSNFYDLRAKQNVYFNQRAKKRRIVMCHSFVYKRPDQLTGKMSDSDECFDILRDIKPSNLEPLAKKVTDSFNCEELVAASAYMRTKSSHLLGG

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00001	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan
PF02012	BNR	BNR/Asp-box repeat	Repeat	Interproscan
PF21471	Reelin_subrepeat-B	Reelin subrepeat B	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000276	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR002860	Repeat	BNR repeat	Interproscan
IPR002861	Domain	Reeler domain	Interproscan
IPR017452	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR034968	Family	Reelin	Interproscan
IPR036278	Homologous_superfamily	Sialidase superfamily	Interproscan
IPR042307	Homologous_superfamily	Reeler domain superfamily	Interproscan
IPR049419	Repeat	Reelin, subrepeat B	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11841	REELIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001764	Biological Process	neuron migration	Interproscan
GO:0004930	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0007417	Biological Process	central nervous system development	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0070325	Molecular Function	lipoprotein particle receptor binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-