Gene detail

Detailed information of Lsat_s051.g0100.t1 in Lamellibrachia satsuma Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Lsat_s051.g0100.t1	MULTIDRUG RESISTANCE PROTEIN	Lsat_scaffold051	2372224	2392048	+

Gene Structure

More details in Jbrowse Sequence

CDS

Lsat_s051.g0100.t1

ATGGACGATGATACGGCAGAGAAGAACACGAAAGAGCGGCCAAAATGGGACATGGACTTGGATTACGCCTCTCTGGATGGCAATTGGCTGGAGAGAAACGCCGCCGAACGACAGTTGGGTTTCGCCTACTGCCCTATGCTTCTCCCTGACTCCTACTGGGTGGAAACAAAGCGAACCTTACGAATATCATGGAGCCTAATCATCACGCAAGTATGCACGTCAGCCATGCAGCCGATCTCCACAATGTTTGGTGGACAACTTGGTGAAATAGACCTGGATGTTATCGGCCTTGCAAATACGCTCATCAACATTCTTGGCAGCACGATAGCTCTGGGCATGTGTACAGCCTGCGTTACGCTTTTCTCCCAGGCTTACGGTAACGACAACAGAAAACTTCTGGGCACTCTGCTGCAGCGAAGTTTGATTATCATTTCGTTGACGCTCTCGCTGTGTTACGCTCTGCACCTCAACATCGAAGGTATCTTGGTGATTCTGGGCCAAGACCGGGAGATAGCCAGGTTAACAGCTGAATACCTACTCTTGTTCACGCCAGGGATGTTTTGCATGTTCGTTAACGCGGTGCTCGTTACTTTCCTGCAATGCCAGAATGTTGTCTTGCCGTTCGCCATCATCGGGGTCGTGACCTTGGCCTTCCTTGCCCTGTTTCAATACGTCTGTATCTTCGTTCTCAACTGGGGTCTTCAGGGTTCTGCCATTGCTCAAGCGGCTGCATATTTCGTCAATCTGTTGTTTACTCTCGCGTTCATATTCACCACGAAGATTCACAAAGCCACGTGGGATGGGTGGAGCAGAAGCTGTCTGCAGGAGTGGGGCGTCATCGCAAGGCTCGGCGTGCTGGGCGTGCTCATGGCCAGCTTCGAGTGGTGGGCCTTCGAAGTAACCGTCCTGTTGTCCGGAGTTCTCGGGAAGAGGCAGCTTGCTTCACAATCTATCATATTCAACATTTCAAGTCTCGTTTACGCCTTTGTCAAAGGACTTAGCGCTGGAATTTCAATTCGAGTCGGTCAAGCCGTAGGATCTGGACACCCAGAGGATGCAAAGGTCGCGGCCAAAGTCGGTTTGATCATGGCAGAACGTGGTCATGGGGTCCAGGAACGCGTGCATGGGGTACAAGAACGTGTGCATCGGGTCCAAGAACGTGTGCATGGAGTCCAAGAACGTGTGCATGGTGTCCAAGAACGTGTGCATGGGGTCCAAGAATGTGTGCATGGGGTCCAAGAACGTGTGCAGGTGTCCAAGAACGTGTGCATGGGGTCCAAGAACATGTGCATGCGGTCCAAGAACGTGTGCATGGGGTCCAAGAACGTGTGCATGGGGTCCAAGAACGTGTGCATGTTGTCCAAGTGCGTGGGGTCCAAGAACGTGTGCATGGGGTCCAAGAACGTGTGCATGGGGTCCAAGAACGTGTGCATGAGGTCCAAGAACGTGTGCATGGGGTCCAAGAACGTGTGCATGGGGTCCAAGAACGTGTGCGTGGGGTCCAAGAACGTGTGCATGGGGTCCAAGAACGTGTGCATGCTGTCCAAGAACGTGTGCATGGGGTCCAAGAACGTGTGCATGGGGTCCAAGAACGTGTGCATGAGGTCCAAGAACGTGTGCATGGGGTCCAAGAACGTGTGCATGGGGTCCAAGAACGTGTGCGTGGGGTCCAAGAACGTGTGCATGGGGTCCAAGAACGTGTGCATGTTGTCCAAGAACGTGTGCATGGGGTCCAAGAACGTGTGCATGGGGTCCAAGAACGTGTGCATGAGGTCCAAGAACGTGTGCATGGGGTCCAAGAACGTGTGCATGGGCGTTGTAAGGTTTAGGGTGGATGTTATGAAAGAAACGAGTTATCTGCTTGTAGGATGCACGTCTCTCCTCTTTTTGGTACTGATGGTTTTGCTACGGACGGAACTTCCACGATTATTTACAGACAACAGCAATGTGCTGGACATGACAGCTAATCTCATGCCTTTGTCGGCCCTCTACAGTGCCTTTGCCTGCTATGCGTCTGTGTCGCGGGCGATATTACGTGGATGTGGCAAGCAATCAGTTGGTACTCTTGTCGCATTTGTCAGCTACTACATAGTGGCGCTACCTATTGGCGTCCCTCTCATGCTTCTGACATCCTTCGGAATGACAGGTATGTGGATCGGTCTAAATGTCGGACTGTTTATCGGCACCGTTGTCTACCTTGTCTACATACTTCACACTGTCGACTGGGAAAACGTGGCGCGGCAGGGCAAAGAACGATTATGTGCGTTTACAGAACTGGTCGTGTCAGTTACAAATAACGAGCGCACACCGCTGCTCCGCGCCAGCAAGACATCGAATGCGGACATCAGGCGCCCGATCCAGTCAAATGCGTCTTTGACGAGACGAGTCGTGGTGCAACGGGTATCGACGGTTATCGCGTGCATCTGCGTTGTCTCGGCCAGCGTTTTCCTCAGACATCTAGTGCACTTCCATTTCCTGCCACACGAAAGAACGATGTTCCGCAATGTCACTGCAGCTTCATGGCGGAACGAAACAACATGGCAAGACATTGCCGTGTTATTGTGGAAAGTCATGTGA

Transcript

Lsat_s051.g0100.t1

GGGTACACAGGACGTGATGGACGATGATACGGCAGAGAAGAACACGAAAGAGCGGCCAAAATGGGACATGGACTTGGATTACGCCTCTCTGGATGGCAATTGGCTGGAGAGAAACGCCGCCGAACGACAGTTGGGTTTCGCCTACTGCCCTATGCTTCTCCCTGACTCCTACTGGGTGGAAACAAAGCGAACCTTACGAATATCATGGAGCCTAATCATCACGCAAGTATGCACGTCAGCCATGCAGCCGATCTCCACAATGTTTGGTGGACAACTTGGTGAAATAGACCTGGATGTTATCGGCCTTGCAAATACGCTCATCAACATTCTTGGCAGCACGATAGCTCTGGGCATGTGTACAGCCTGCGTTACGCTTTTCTCCCAGGCTTACGGTAACGACAACAGAAAACTTCTGGGCACTCTGCTGCAGCGAAGTTTGATTATCATTTCGTTGACGCTCTCGCTGTGTTACGCTCTGCACCTCAACATCGAAGGTATCTTGGTGATTCTGGGCCAAGACCGGGAGATAGCCAGGTTAACAGCTGAATACCTACTCTTGTTCACGCCAGGGATGTTTTGCATGTTCGTTAACGCGGTGCTCGTTACTTTCCTGCAATGCCAGAATGTTGTCTTGCCGTTCGCCATCATCGGGGTCGTGACCTTGGCCTTCCTTGCCCTGTTTCAATACGTCTGTATCTTCGTTCTCAACTGGGGTCTTCAGGGTTCTGCCATTGCTCAAGCGGCTGCATATTTCGTCAATCTGTTGTTTACTCTCGCGTTCATATTCACCACGAAGATTCACAAAGCCACGTGGGATGGGTGGAGCAGAAGCTGTCTGCAGGAGTGGGGCGTCATCGCAAGGCTCGGCGTGCTGGGCGTGCTCATGGCCAGCTTCGAGTGGTGGGCCTTCGAAGTAACCGTCCTGTTGTCCGGAGTTCTCGGGAAGAGGCAGCTTGCTTCACAATCTATCATATTCAACATTTCAAGTCTCGTTTACGCCTTTGTCAAAGGACTTAGCGCTGGAATTTCAATTCGAGTCGGTCAAGCCGTAGGATCTGGACACCCAGAGGATGCAAAGGTCGCGGCCAAAGTCGGTTTGATCATGGCAGAACGTGGTCATGGGGTCCAGGAACGCGTGCATGGGGTACAAGAACGTGTGCATCGGGTCCAAGAACGTGTGCATGGAGTCCAAGAACGTGTGCATGGTGTCCAAGAACGTGTGCATGGGGTCCAAGAATGTGTGCATGGGGTCCAAGAACGTGTGCAGGTGTCCAAGAACGTGTGCATGGGGTCCAAGAACATGTGCATGCGGTCCAAGAACGTGTGCATGGGGTCCAAGAACGTGTGCATGGGGTCCAAGAACGTGTGCATGTTGTCCAAGTGCGTGGGGTCCAAGAACGTGTGCATGGGGTCCAAGAACGTGTGCATGGGGTCCAAGAACGTGTGCATGAGGTCCAAGAACGTGTGCATGGGGTCCAAGAACGTGTGCATGGGGTCCAAGAACGTGTGCGTGGGGTCCAAGAACGTGTGCATGGGGTCCAAGAACGTGTGCATGCTGTCCAAGAACGTGTGCATGGGGTCCAAGAACGTGTGCATGGGGTCCAAGAACGTGTGCATGAGGTCCAAGAACGTGTGCATGGGGTCCAAGAACGTGTGCATGGGGTCCAAGAACGTGTGCGTGGGGTCCAAGAACGTGTGCATGGGGTCCAAGAACGTGTGCATGTTGTCCAAGAACGTGTGCATGGGGTCCAAGAACGTGTGCATGGGGTCCAAGAACGTGTGCATGAGGTCCAAGAACGTGTGCATGGGGTCCAAGAACGTGTGCATGGGCGTTGTAAGGTTTAGGGTGGATGTTATGAAAGAAACGAGTTATCTGCTTGTAGGATGCACGTCTCTCCTCTTTTTGGTACTGATGGTTTTGCTACGGACGGAACTTCCACGATTATTTACAGACAACAGCAATGTGCTGGACATGACAGCTAATCTCATGCCTTTGTCGGCCCTCTACAGTGCCTTTGCCTGCTATGCGTCTGTGTCGCGGGCGATATTACGTGGATGTGGCAAGCAATCAGTTGGTACTCTTGTCGCATTTGTCAGCTACTACATAGTGGCGCTACCTATTGGCGTCCCTCTCATGCTTCTGACATCCTTCGGAATGACAGGTATGTGGATCGGTCTAAATGTCGGACTGTTTATCGGCACCGTTGTCTACCTTGTCTACATACTTCACACTGTCGACTGGGAAAACGTGGCGCGGCAGGGCAAAGAACGATTATGTGCGTTTACAGAACTGGTCGTGTCAGTTACAAATAACGAGCGCACACCGCTGCTCCGCGCCAGCAAGACATCGAATGCGGACATCAGGCGCCCGATCCAGTCAAATGCGTCTTTGACGAGACGAGTCGTGGTGCAACGGGTATCGACGGTTATCGCGTGCATCTGCGTTGTCTCGGCCAGCGTTTTCCTCAGACATCTAGTGCACTTCCATTTCCTGCCACACGAAAGAACGATGTTCCGCAATGTCACTGCAGCTTCATGGCGGAACGAAACAACATGGCAAGACATTGCCGTGTTATTGTGGAAAGTCATGTGACATAAACAGAAACAAGAAGACATGGCAAGATGGGATGTTGCTGATAATTATGGGACACGAACAGAAACGCTGCTACATGGCAATATATTAGCATGTTCCTGCACAAATTACTGGAACAGGAAGATAGTGTGCATGTACGTACGCGCGTGCGGACGTGCGTGCGTGCGTGCGTGCGTGCGTGTGTGTGTGTGTGTGCATTTATGATGGCTCTGGTACACAGTGATTCAAACTGCTACGCTACAATTTATACTTCCTTTTAATGATAGCCCTCGCAACAACTTCGGCGGTATTTTGCCAATAGTCGGCGCTACACTAGACAAACATTGTATAGGCGCCACTACCATGTTGTTTGTGGAAGGGTATGTCAATATTGTGTAGGGCAGGGCAGAAGGTCGTAAACACTCGGTGTTTTTCCCCATGTAATACTTGTCCTAGCAAGTGGTACACTGGGAATACTGCTGCATTCGTTGGATACAGACAAGTTGCGTATTGGTTTTGGGCAGGTTTCCTGTGGTATTTTTGGTCTTCGACCATTCTTTAATGTGACCTAGCCCTAGTCGAAGGCGTTACGCCCTTCTTGACCATGCAACGTGTTTGGCCAACACATCAGAACACGTAAAATAATTTGCTTCACGCACCAAAAGAAAATAAAAAAATTCGGCACTCTCTGTAGGCCATCAATTGTCTGGTAATGAACAGTGGGACATTGG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01554	MatE	MatE	Family	Interproscan
PF21300	LbR_Ice_bind	Grass antifreeze beta roll	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002528	Family	Multi antimicrobial extrusion protein	Interproscan
IPR011049	Homologous_superfamily	Serralysin-like metalloprotease, C-terminal	Interproscan
IPR045069	Family	Multidrug and toxic compound extrusion family, eukaryotic	Interproscan
IPR048518	Repeat	Ice-binding protein, beta roll	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11206	MULTIDRUG RESISTANCE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0015297	Molecular Function	antiporter activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0022857	Molecular Function	transmembrane transporter activity	Interproscan
GO:0042910	Molecular Function	xenobiotic transmembrane transporter activity	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:1990961	Biological Process	xenobiotic detoxification by transmembrane export across the plasma membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-