Gene detail

Detailed information of OALVG00000014271.1 in Oasisia alvinae Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OALVG00000014271.1	HELICASE WITH DEATH DOMAIN-RELATED	tig00001519	1571350	1583989	-

Gene Structure

More details in Jbrowse Sequence

CDS

OALVG00000014271.1

ATGGAAACAGGAGACGTCATTATCTATTCGAGGAATTCATTCCACGATTTACCAGAAACCTCAGCGCAAACCCTCGACTACCATCCAAACATCCCCATGGATGATGTAGCGAGTGAAGTTGACAATACGCTGATGGGTCACCAGGCGCGAGGAGAGAATGGCCGGACGGAGCGGCTCCAGTTACGAGACTACCAACTGGAGCTGGCGGAGCACGCAGTCCTAGGAAGGAACTCTATCGTCGTTGCTCCAACAGGCAGTGGAAAGACACACGTAGCCTTGCACATTGCCAAGTGTCATCTGGAGGCAGCGGATCTGGAGGACGATCGCAAGGTCGTGTTTCTCGTGCCGACGGTGAGTCTGGTGAACCAACAGAAGGAGATGTTCTCGCGGTACTTCTCTCCTACGTACAAGACGGTCGGAGTGAGTGGGGACAGTCCTCAGTTGTCACTCGCGGGACTAGTTCCAACATATGACATCTTCGTTGTGACGCCTCAGATTCTAGTGGACGCCATCAAGAAAGACTTCACGCCGATTGATATAAGTGTCTTCACGCTGCTCATCTTTGACGAGTGCCACCACACAGACAAGGGGCATCCCTACAACAAGGTGATGGCCGATTACCTGGACAAGAAGCTGGAAGGGGACCGCAATCTCCCACAGGTGGTCGGACTGACAGCATCTGTCGGAGTAGGCAAAGCGAAGGATCTGGAAGGAGCCATGACACACATTCTAAAGCTGTGTGCCAACATGGATGCACAGAAGTTGAGCACGGTTCAGAAAAATAGACAGCAACTTCTGAAATTCACACACAAAGCCAGAGAAGGAAATCCATTTGAAGTCCCGCGCCGAACACATGACCCATTCAAGACTGAAATATGTCAACTGATGCAGCTGATTGAACGAAAGCTGGCGACTGCTCCTGCGTTACCGAATGCGCCACAAATGACCGGCTTGGCCAAGCTGTTAGTGGCGCCATCTGAACGTGGAAGTGAGCGATACACGCAGTGGGTGAACTCACTGACCACTCCCGTCACTGAGGTCAGGGACCCGGACACACGACGGCTCATTATGACGTGTATTGAGCATTTGAAATTAATATCACCGAATTCATTTATTTTTGTGCTATATCTAATAGTCTTTCTCGTCTCCCTCATTGTCCTCCTCACCTTCCTCATTGTCCTCCTCACCTTCCGCATCTTCCTCATTGTCCTCCTCACCTTCCGCATCTTCCTCATTGTCCTCCTCAACTTCGTCATCTTCCTCATTGTCCTCCTCACATTCCTGATCTTCCGCATTGTCCTCCTCACCTTCGTGATCTTCCTCATTGTCCTCCTCACCTTCCTGATCTTCCTCATTGTCCTCCTCACCTTCCTGATCTTCCTCATTGTCCTCCTCACCTTCCTCATTGTCCTCCTCACCTTCCTGATCTTCCTCATTGTCCTCCTCACCTTCCTGATCTTCCTCATTGTCCTCCTCACCTTCCTCATTGTCCTCCTCATCTTCCTCATTGTCCTCCTCACCTTCCTCATCTTCCTCATTGTCCTTCTCACCTTCCTCATTGTCCTCCTCACCTTCCTCACCTTCCTCATTGTCCTCCTCATCTTCCTCATTGTCCTCCTCACCTTCCTCATCTTCCTCATTGTCCTCCTCATCTTCCTCATTGTCCTCCTCACCTTCCTCATCTTCCTCATTGTCCTCCTCACCTTCCTCATTGTCCTCCTCATCTTCCTCATTGTCCTCCTCACCTTCCTCATCTTCCTCATTGTCCTCCTCACCTTCCTGATCTTCCTCATTGTCTTCCTCACCTTCCTCATTGTCCTCCTCACCTTCCTCATTGTCCTCCTCACCTTCCTCATCTTCCTCATTGTCTTCCTCACCTTCCTCATTGTCCTCCTCACCTTCCTCATTGTCCTCCTCACCTTCCTAATCTTCCTCATTGTCTTCCTCACCTTCCTCATTGTCCTCCTCACCTTCCTGATCTTCCTCATTGTCTTTCTCACCTTCCTCATTGTCCTCCTCACCTTCCTCATTGTCCTCCTCACCTTCCTCATTGTCCTCCTCACCTTCCTCATCTTCCGCATTGTCCTCCTCACCTTCCTCATCTTCTTCATTGTCCTCCTCACCTTCCTTATGATGTACAACGAGGCGTTGTACATTAACGCCGACTGTCAAGTACAAGACGCGCTCGAATTCGTGCTGAAGAGTGTGGAAAAGATTAACCTGGAACTTGCGGACGACACAGAGCGATGGCTCAACCAAATCTTCAGAGAGAGAAAAGCGGCTCTGGAGGCAATGCGAGATGATCCCAATCTCAGCAATCCGAAGCTCGACACCATTCGGCAGATCCTCCTCAGATATTACCAGAACGATCATGATTCCCGGGGGATCATATTCTGTCGTACCCGGGCAACAACGGTCGCTTTGGAAAGGTGGATGAAGGAGACTCCAGACCTACGACCCCTGAAGCCGAAGCGTCTCGTGGCGGCCAATGCTCCAACTGATAAAGGAGGAATGGTACAGAGCGAGCAGGACGAAGCTCTCAGGCTGTTCCGAGACGGCCACCACAAAATCATCATAGCGACGTCCGTGGCTGAGGAGGGGCTGGATGTACAGGCGTGTAACTTTGTCATGCGCTACGAACACGTCACTAATGAAACGGCCCGTATTCAGGCCCGAGGTCGAGCTCGTAAGCCGGGAGCCGAGTACATGCTGGTGACGGAGCTGGGATGCGGAGCCGCGCAGAGGGACGAGATCAACCGGATGCGGGAAGACCTGATGAACGACGCCATCCGCAGGATCGACCGGATGGACATGGCCGTCTTCACGCGCCAAGTGAGGAAGCACCAACACGACGCGAAGCTGGCGAGACAGCTGTCGATGATGGGAGAACAGCGGAAGTTGGCGCAGAGGAACCGGCGACGACCCGAAGTTCTGCACCGTCTGTTGTGTAGCAGATGTTCCACGCTCGTCTGCATCTCGCTGGACATACGGCGCGTGGAGAACGTCCACCACGTGGTCATCGACGAACACCTGAAGACGGTGGCCAGCATGAGGAAGTATACGAAGGCGGCGAAGTACGGAGACTTCGACCAGAGAGGCAAGCTGAACTGTCGCAAGTGTGACAAGGAATGGGGCGTCGTGGCACACTACAATAACGTCCTCTTCCCCGTCCTCAAGCTGACCAACTTCGTGCTGGAGGACGACAATGGGCAGCGGAAGTGTTACAAGAAGTGGAAGGAAGTGCCGTTCCACGTTGAAGAGTTGTCGGCCGACGACATTCAGCGTCTCAACGAGGAAGACATTGAGCTGGTTCAGTGGTGA

Transcript

OALVG00000014271.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF11648	RIG-I_C-RD	C-terminal domain of RIG-I	Domain	Interproscan
PF18119	RIG-I_C	RIG-I receptor C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000832	Family	GPCR, family 2, secretin-like	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR003339	Family	ABC/ECF transporter, transmembrane component	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR017452	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR021673	Domain	RIG-I-like receptor, C-terminal regulatory domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR038557	Homologous_superfamily	RIG-I-like receptor, C-terminal domain superfamily	Interproscan
IPR041204	Domain	RIG-I-like receptor, C-terminal	Interproscan
IPR051363	Family	RIG-I-like Receptor (RLR) Helicase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14074	HELICASE WITH DEATH DOMAIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004930	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0007186	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-