Gene detail

Detailed information of OALVG00000019069.2 in Oasisia alvinae Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OALVG00000019069.2	CALPONIN	tig00002965	88317	126967	-

Gene Structure

More details in Jbrowse Sequence

CDS

OALVG00000019069.2

ATGGGCGAGCGCGCGCAAGCAGCCGGGGACATGCGAATCATCGCTGGCAAGGTAAGCGCACGTCGCCAACTGCGGGCCAACGAGGGCCGCGGATACACGTCCATGTTGGGGACCGGGCGCGCACACGCAGCCGGAGACATGCTGCTGATTGTAAACAAGATTGCTTCCCGTTACGATGGTGAAGCAGAGGCGGAGGTGCTGGGATGGATCAACGCGTTGATTGGCGAGGATGTCAAGCCGGGCATGCGCAATGTCGAGTCGCAGATGAAGAACGGCATCTTCCTCGTCAGGCTGGCGAAGGCGGTTCAGGATGGAACCCCGAGCTGCCCGGCCAAGGCGAAGAAGATGAGGCTGAAGCCTAACACCATGTCGGCACCTTTCAAACAGATGGAGAACATCAACGTGTTCCTCAACTACTGCGAGGCGTACGGCGTGCCGAAGACCGGCCTCTTCCAGACCGTCGACCTGTTCGAGGGCCGCAACATGGCCCAAGTCCTCAACTGTATCCAGCAACTCGGCACCGAGTGCCAACGCAACGGGTTCAACGGGCCGACGATTGGCGCGCGCCCGACGGAGAAGAACATCCGGGAGTTCACTGACGAGCAAATGCGTGCTGGTCACTCGATCATCGGCCTGCAGGCGGGCACCAACAAGTGCGCCTCGCAGAAGGGCATGAGCATGGGCTCAGCCCGCCACGTCGCCGACATCCGGGCCGACGACATGGACAGGGACGGCATGGGAATCATCGGTCTGCAGTCGGGGAGCAACAAGGGCGCCTCGCAGGCTGGTATGTCGATGGGATCGGTGAGGCACGTCTCCGATATCCGGGCTGATGATATGGACAAGGACGGAATGGGGGTCATTGGATTGCAGGCCGGAAGCAATAAGGGCGCGTCCCAGAAGGGGATGTCCATGGGATCGGTGAGGCATGTCTCCGACATCCGGGCTGACGATATGGACAAGGACGGCATGGGAGTGATTGGCCTGCAGATGGGGTCGAACAAGGGAGCTTCCCAGAAGGGGATGTCAATGGGCGCCGTACGTCACGTCGCTGACATTCGCGCCGACGACATGGACGCGGCCGGTCAGGGAGTGATTGGCCTGCAGATGGGGTCGAACAAGGGAGCTTCCCAGAAGGGGATGTCCATGGGCGCCGTACGTCACGTCGCTGACATTCGCGCCGACGACATGGACGCCAGCGGTCAAGGGATCATCGGCTTGCAGATGGGTTCGAACAAGGGAGCGTCGCAGAAGGGGATGAGCATGGGAGCTACTCGCCACGTGGCCGATATCCGGGCCGACGACATGTCACAGGCCGGTCAGGGCGTCATCAATCTGCAGTACGGCAGCACGGCCGGCGCCAGCCAACAGGGCATGTCCATGGGCGGAAGGCGGAACATCAACATCCGTGCGGTGACGTCACACTGTCCACGCTGTCCACGAGAGGCGACCATGACGTCACCGTTGCTTCCACTAACGACGCCATCTTGTATCATCCGGGTGCTTGCTGCCTGCCTCCTCCTGCTCGCTGCCCCCGGCTGTCTGGCCGTCTGCTTCAGACGGTGCGTCAGCCTCAGCGGCTCTCTGTCCTGCCCCAACGCCGGTTGCACCGTCATCCCAGTCGACGAAATCCGCCCCGACACCCAGCAGGTGTCGCTGCAGTCCAACGTCATTTCCGCCGTGCCCGTGCTGCGCAACTGCTCCGGCGTGCGCTCGCTGAACCTCGCCGGAAACAACATCCGCCGCCTGGCGAGCGGCGCGTTCCGCGCGTGCGCCAACCTGCGCGTGCTCAACCTGACCGGCAACGCCATCTGGCGGCTGTCGTCGGACCACTTCGCCGGCCTCGGGCGTCTGAGGCGTTTGTTCCTGAACAGAAACGAACTAAAGTCGCTCGGCTCGAACCTCTTCTACCGGTATCTCCCCAGCCTACTGACCCTCGACTTGTCAGAAAACCAAATCGCGACGATGGATCCGAACGCGTTAACTGATCTACGACATCTTGTCTCGTTGCAGCTGAGCGATAATAAACTCACCAGCATCGAGACGATCCATTTTCTCGGGCTGGGGAGCCTGCGGAATTTGAACTTAAACGGCAATGAAATCGAGAACTTGACGATTGCTAATTTCGTCGAATGTCGCAGTCTGGAGCTGTTGGATTTGAGTGAAAATCATTTATCGGTGATTCCTTTTCAGACGTTCATAGGACTGAAATCTCTTAAGGTATTGCGACTCAATGGAAACCGCCTGAGGTCGCTACTATCGACCTCGCTCCAAGTGCCCGGATTACAGGTGATTTACCTGGACGACAACCCTCTGACACATCTTCCAGTCGGCATCTTCCCAAACACGACCACTGCGTTCAGTCTGACCAATATACCCCACCTGGCGGTCATACGTAACGATACATTCGCCGGACTACGCATGCTCGTCACGGTGAAGATGAACGGCAACTTCCGGTTGACGGAAATTGAAGCACGAGCGTTTGGTCAGGCCGGCGCCACTCAAGTGGCAGTCGCAAACCTCAGCGGCAACGCACTGACCACGTTGCACGCGTCCACGCTCAACTGGGCGGACGTCGATGTACTGGACCTGAGGGGCAATCCCTGGCGTTGTGACTGTCATCTGGCATGGGTGAAACGACTCTCGGCGGAAGTGACAAGTCAAGTAACTTGTCGCACGCCCCGGTCCGCTCGTAATCGGAGCATCGCGAGCCTGACGAGCGCCGAGTTGACGTGCCCTGACCCGGCCAGACACCGGCTGCTCAAGACCCTCGTCGTGTGCGTCTCCCTCGGCGCTGTCCTCCTCGCTGTCCTCGCTACTCTCGTCATCCGGCGACGTCGACGCCAGGTTCGGGTTGGCGTCAGCGGTTCCTCGGTGTACAGCACCATCTACAACGTCGTGAGGACTGAGGAAGGGGAGGACGAGGGGGAGGAGGTGTGCTTCCTGCGCGGCAGTGGGACCGGTAGAGGGAGGAAGGCGACTCCCGTTCCCGTCCACGTGTAG

Transcript

OALVG00000019069.2

CGGGTCTGGCGGCCCGGCCGGGCTACAGCCGTACGGCGGTGGCGGCTGCTTATCGGAGCCATCGCGATACGTAATAACGCACCCAGACCCGCGACCGGGCCCGTTCCGATACCGACCTCGCCCCAGTACGGTGCGTGTGTGCAGCTAGCTCTCTGTCTCTGTGCTTCTCTCTCCCGTCTCCCGTTCACGGCTCCCGCGGATTACGCGTCCTCCTTCCTTACGATCCACCCGAGCTCCACCACACGACAAGCAGACATGGGCGAGCGCGCGCAAGCAGCCGGGGACATGCGAATCATCGCTGGCAAGGTAAGCGCACGTCGCCAACTGCGGGCCAACGAGGGCCGCGGATACACGTCCATGTTGGGGACCGGGCGCGCACACGCAGCCGGAGACATGCTGCTGATTGTAAACAAGATTGCTTCCCGTTACGATGGTGAAGCAGAGGCGGAGGTGCTGGGATGGATCAACGCGTTGATTGGCGAGGATGTCAAGCCGGGCATGCGCAATGTCGAGTCGCAGATGAAGAACGGCATCTTCCTCGTCAGGCTGGCGAAGGCGGTTCAGGATGGAACCCCGAGCTGCCCGGCCAAGGCGAAGAAGATGAGGCTGAAGCCTAACACCATGTCGGCACCTTTCAAACAGATGGAGAACATCAACGTGTTCCTCAACTACTGCGAGGCGTACGGCGTGCCGAAGACCGGCCTCTTCCAGACCGTCGACCTGTTCGAGGGCCGCAACATGGCCCAAGTCCTCAACTGTATCCAGCAACTCGGCACCGAGTGCCAACGCAACGGGTTCAACGGGCCGACGATTGGCGCGCGCCCGACGGAGAAGAACATCCGGGAGTTCACTGACGAGCAAATGCGTGCTGGTCACTCGATCATCGGCCTGCAGGCGGGCACCAACAAGTGCGCCTCGCAGAAGGGCATGAGCATGGGCTCAGCCCGCCACGTCGCCGACATCCGGGCCGACGACATGGACAGGGACGGCATGGGAATCATCGGTCTGCAGTCGGGGAGCAACAAGGGCGCCTCGCAGGCTGGTATGTCGATGGGATCGGTGAGGCACGTCTCCGATATCCGGGCTGATGATATGGACAAGGACGGAATGGGGGTCATTGGATTGCAGGCCGGAAGCAATAAGGGCGCGTCCCAGAAGGGGATGTCCATGGGATCGGTGAGGCATGTCTCCGACATCCGGGCTGACGATATGGACAAGGACGGCATGGGAGTGATTGGCCTGCAGATGGGGTCGAACAAGGGAGCTTCCCAGAAGGGGATGTCAATGGGCGCCGTACGTCACGTCGCTGACATTCGCGCCGACGACATGGACGCGGCCGGTCAGGGAGTGATTGGCCTGCAGATGGGGTCGAACAAGGGAGCTTCCCAGAAGGGGATGTCCATGGGCGCCGTACGTCACGTCGCTGACATTCGCGCCGACGACATGGACGCCAGCGGTCAAGGGATCATCGGCTTGCAGATGGGTTCGAACAAGGGAGCGTCGCAGAAGGGGATGAGCATGGGAGCTACTCGCCACGTGGCCGATATCCGGGCCGACGACATGTCACAGGCCGGTCAGGGCGTCATCAATCTGCAGTACGGCAGCACGGCCGGCGCCAGCCAACAGGGCATGTCCATGGGCGGAAGGCGGAACATCAACATCCGTGCGGTGACGTCACACTGTCCACGCTGTCCACGAGAGGCGACCATGACGTCACCGTTGCTTCCACTAACGACGCCATCTTGTATCATCCGGGTGCTTGCTGCCTGCCTCCTCCTGCTCGCTGCCCCCGGCTGTCTGGCCGTCTGCTTCAGACGGTGCGTCAGCCTCAGCGGCTCTCTGTCCTGCCCCAACGCCGGTTGCACCGTCATCCCAGTCGACGAAATCCGCCCCGACACCCAGCAGGTGTCGCTGCAGTCCAACGTCATTTCCGCCGTGCCCGTGCTGCGCAACTGCTCCGGCGTGCGCTCGCTGAACCTCGCCGGAAACAACATCCGCCGCCTGGCGAGCGGCGCGTTCCGCGCGTGCGCCAACCTGCGCGTGCTCAACCTGACCGGCAACGCCATCTGGCGGCTGTCGTCGGACCACTTCGCCGGCCTCGGGCGTCTGAGGCGTTTGTTCCTGAACAGAAACGAACTAAAGTCGCTCGGCTCGAACCTCTTCTACCGGTATCTCCCCAGCCTACTGACCCTCGACTTGTCAGAAAACCAAATCGCGACGATGGATCCGAACGCGTTAACTGATCTACGACATCTTGTCTCGTTGCAGCTGAGCGATAATAAACTCACCAGCATCGAGACGATCCATTTTCTCGGGCTGGGGAGCCTGCGGAATTTGAACTTAAACGGCAATGAAATCGAGAACTTGACGATTGCTAATTTCGTCGAATGTCGCAGTCTGGAGCTGTTGGATTTGAGTGAAAATCATTTATCGGTGATTCCTTTTCAGACGTTCATAGGACTGAAATCTCTTAAGGTATTGCGACTCAATGGAAACCGCCTGAGGTCGCTACTATCGACCTCGCTCCAAGTGCCCGGATTACAGGTGATTTACCTGGACGACAACCCTCTGACACATCTTCCAGTCGGCATCTTCCCAAACACGACCACTGCGTTCAGTCTGACCAATATACCCCACCTGGCGGTCATACGTAACGATACATTCGCCGGACTACGCATGCTCGTCACGGTGAAGATGAACGGCAACTTCCGGTTGACGGAAATTGAAGCACGAGCGTTTGGTCAGGCCGGCGCCACTCAAGTGGCAGTCGCAAACCTCAGCGGCAACGCACTGACCACGTTGCACGCGTCCACGCTCAACTGGGCGGACGTCGATGTACTGGACCTGAGGGGCAATCCCTGGCGTTGTGACTGTCATCTGGCATGGGTGAAACGACTCTCGGCGGAAGTGACAAGTCAAGTAACTTGTCGCACGCCCCGGTCCGCTCGTAATCGGAGCATCGCGAGCCTGACGAGCGCCGAGTTGACGTGCCCTGACCCGGCCAGACACCGGCTGCTCAAGACCCTCGTCGTGTGCGTCTCCCTCGGCGCTGTCCTCCTCGCTGTCCTCGCTACTCTCGTCATCCGGCGACGTCGACGCCAGGTTCGGGTTGGCGTCAGCGGTTCCTCGGTGTACAGCACCATCTACAACGTCGTGAGGACTGAGGAAGGGGAGGACGAGGGGGAGGAGGTGTGCTTCCTGCGCGGCAGTGGGACCGGTAGAGGGAGGAAGGCGACTCCCGTTCCCGTCCACGTGTAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00307	CH	Calponin homology (CH) domain	Domain	Interproscan
PF00402	Calponin	Calponin family repeat	Repeat	Interproscan
PF13855	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000483	Domain	Cysteine-rich flanking region, C-terminal	Interproscan
IPR000557	Repeat	Calponin repeat	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR001715	Domain	Calponin homology domain	Interproscan
IPR003096	Family	Smooth muscle protein/calponin	Interproscan
IPR003591	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR036872	Homologous_superfamily	CH domain superfamily	Interproscan
IPR050606	Family	Calponin-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47385	CALPONIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007015	Biological Process	actin filament organization	Interproscan
GO:0015629	Cellular Component	actin cytoskeleton	Interproscan
GO:0051015	Molecular Function	actin filament binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-