Detailed information of OS493_003990-T1 in Lophelia pertusa

Genomic Location: scaffold_8:1095934...1134642
NR annotation: KAJ7387027.1, plasma membrane repair [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q5SPC5Otoferlin OS=Danio rerio OX=7955 GN=otof PE=3 SV=1
Q9ERC5Otoferlin OS=Rattus norvegicus OX=10116 GN=Otof PE=1 SV=2
Q9HC10Otoferlin OS=Homo sapiens OX=9606 GN=OTOF PE=1 SV=3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16165Ferlin_CFerlin C-terminusFamilyInterproscan
PF00168C2C2 domainDomainInterproscan
PF08150FerBFerB (NUC096) domainDomainInterproscan
PF08151FerIFerI (NUC094) domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR035892Homologous_superfamilyC2 domain superfamilyInterproscan
IPR000008DomainC2 domainInterproscan
IPR037725DomainFerlin, sixth C2 domainInterproscan
IPR012968DomainFerIin domainInterproscan
IPR037722DomainFerlin, third C2 domainInterproscan
IPR032362DomainFerlin, C-terminal domainInterproscan
IPR012561DomainFerlin B-domainInterproscan
IPR037723DomainFerlin, fourth C2 domainInterproscan
IPR037724DomainFerlin, fifth C2 domainInterproscan
IPR037721FamilyFerlin familyInterproscan
IPR037720DomainFerlin, second C2 domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12546FER-1-LIKEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0016020Cellular ComponentmembraneInterproscan
GO:0007009Biological Processplasma membrane organizationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K19949OTOF; otoferlin-Membrane traffickingko04131deepkoala

Expression pattern
 Expression trend for OS493_003990-T1 global co-expression network
TOP