Gene detail

Detailed information of OS493_004409-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_004409-T1	ARMADILLO-TYPE FOLD-RELATED	scaffold_8	6243693	6259864	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_004409-T1

ATGGCTGCCGCGGGAGGGAATCACTTGTCCAGTGGCAGAGTTAACGTGGGTTTACTGCGGGAATGTGCGAGGAGAGAGCTTCTTCAGTGCTTAAATAAACAACCTGGATCCAAGGCGCTTGTTTGGGATGACAAGCTGACTGGACCATTTGGTTTGATTGCTGAGTACAAGTTACTAAGGGAACATGAGGTAGAAGTCATGTTTCCTCTCCGTCCTGGCCGGTTACCTCCGTCTCAAGTCCATAATGTTGTTTTCATAACAAGACCAAAGCCCTCATTGATGGACATAATTGCTGACAATGTTCTCAGTGAGGAAGGCAGAGAAAGTACGAAAAAAGAGTTCACTATCCTATTTGTTCCAAGAAAAACTATGTTATGTGAAAGAAAGCTTGCGGAACGTAATGTGTCATTCATTAACATTGATGAATATCCGTTGGAACTGATACCCCTGGATAGTGATGTTTTGTCACTAGAAATGGACTCTAGTTTCAAGGAATGCTATTTGGAGAATGACTTCACGTCCTTGTTCTATGTTGCCAACTCCTTGATGACACTTCAAACATTATATGGCACAATTCCCAAGATATATGCAAAGGGAACCATGTCCAAGCGTGTCCTGGACATGATGATGCGCAAGAAGCGAGAAGCAGCCGATTCAGAAAATCAAGTCTCACCGCAGATTGACACGCTTTTGTTGATAGACCGTAATGTGGACCTGCTGACTCCATTATTCACTCAGCTCACTTATGAAGGGTTGATAGACGAACTATATGGAATACACCACACCACCGCCAAGTTTCCCCCTGAGAGATTCCCACAAACCGAGGAGAAAGGACCCAGTGGACTGCAACAACAGCAACCAACAGGACCAAAGAAAGTAGTGTTAAACTCCAGTGATGAACTGTTTTATGATATCCGAGATCTGAACTTCTCAGCTGTAGGAATTAATCTGAGTAGGAGAGCCAAGCAGATCAGTGCTGCTTTTGAGGAACACAAAAGTGCCAAAACAGTTGGAGAAATGAAGCAGTACGTACAGAGGATCCCATTCATGCAAAGAGCAAAAGCTTCTCTTGCAATACATACCACAATAGCCGAAATGGTCAAGGAACAAACAGACCCCGAGGAGTTCAGAGAGCGTATTCAAGTTGAACAAGTTCAGTTTGGCGATATCGTTCACGAGTGTGGATCAGTCCAAGTCATCACTATGGGTTCTGGCGGATCAAAAAAGCTCAAGGTGATACAGCCGCAAGTTAACGTAGCGGCTTCCAGAGTTCCAGACTCTTCAACGCACATAGCTCCTCAACCGAAGATGTTGCAAGATCAGTGGTTGAGTCACGACGGGGGACTCGAGAGAAACGAGAAGAGTTCAGTTCAAGATTACACCGAATGGGTAGTCTTACACACAGGCACGCTTCAAAGATACAAGATGAACTACCCGGAACAAGCTGGGGATTTTCAAAAACTGTTTGACAATATGCAAGTGTTAGTAAACACTACTCATCAGTACTCTAAGCTTGTGGGAGAAACATTGCAGAGTTTATCTAGTCAGAGCTATAGCACATTTTCGTCGGCTGGCACAAACGAGGCTGAGGTATACACCAGGCTAATGGACTTTGTGGTCGAAATCGAAGGCGCTGCAGTGTTACAAAGGTTCGCTCAGAATAGTTTCAACGATTACTACGAGAATAAGGACACTGATTTTAACAACGACAACAGCGATGATGAATCGTCACAATCGTCAGTACAATTTACTTGTTATGATTGTTTGCTTGAAGTGTTAGTAACGATGCAAAACTTTGCAGACTTCCACAACGGCTTTTGTCGGGAGAGTGCAAAAGCTGGCGTAGTTTCGATGTGTCTAGAAAACATCACACGAATCGATCGGGAAAATTACAACTGGGAAAGTGGAGATGATGACTCAGAGCCGTTTCAAATAATTGAAACCTGTCTTGGGATTTTGCATAACATTTCGCGACGACTAAAAGATCGTGACTTGTTCGTAAACAGTGAAGAAACTTTGCTTTATTTTGCCAAATTAAAGGCGCGAGGGGTTGCCGTTACAGCTCTGCTTTGCCTGGGGTATCTGGTCAATGAAGATACCAACCATTTAATTTCCGCGGACGAAAGCTTGCTTCAATTTATCGTAACAATGATAGACGAAGCGTGGCAGACTGAAGATCGTCGCTGCGATGGTTACTCCGCGAAAGAGCTTGCAGAAGGGCTCAGCCATCTTGCCATTAACGACAACAATAAGAAGGTTCTGGGCCAATTTGGAGCGGTACGTGTTTTAACAAAGATTCTACAAACTTCAAAAGAGAACGAGGAGCAAGCAAGCGCGGCAAGGGCTCTGTGGATGTTGGCTTTCGACGATGCTAACAAAGATGTCATTAGACAAGAGGAGGGGACCTTGGACACATTACGCGCGTTACACCACAGTGGTGATCCGGAGGTGAAACAGGCAGCCGCAGGTGCATTGTGGGAGATTGAAGGAAAGACAGCAAGAAACAACGCTGAGACGACAAAAGAGGTGTCAGGACATCACGTGATGATCAGCTACCAATGGGATGCCCAGGACATGTTAGTCGAAGTGAAAAACAAGCTTCAGGCGAGTGGATACCGGGTATGGATGGATCTGGAGCAGATGGGCGGGTCTACGTTAGAGGCGATGGCTAAAGCTGTGGAGAACGCCTCTGTTGTGTTAGTCTGCGTGTCACAGCAATACAAAGAGAGTGCTAACTGCCGATCAGAGGCGGAGTACGCGTATCAACTGAGAAAAGACATCATTCCTTTGATGATGCAACGCAATTACAAAGCGGACGGCTGGTTAGGGATGCTTGTGGGGACAAAACTATGGATTGACTTTAAAAGTAAGCAGGTTATTGATTCAGGAGTAGGAAAACTTGTCAAAGAATTAGCAGGAAGAGGCAAAGATATTGACGTGACAGATGGACCAACAGAGGCAGTGATTCGACCAAGCGAAACCAGTGTTCTTACAACGGCGCCATCCTCTGCGGCGACTGATGTGTCTGGCTGGACAAATGAAGATGTGAAAAAATGGCTGACAGAAATTGGACTGGGACAAGTGTGTGAGGGAGCCATTTCGGAATTCAATGGGCAAACACTGATTAATCTTCAAGAACTTCGCGGAGAATGCCCGGATTATTTCTACAGATGTCTAGAAAACACATTAAACCTGAAAAACATGTTCCATTTGTTCAAGTTCAGACAGGAGCTCAACAAACTGCTTGGACATTAA

Transcript

OS493_004409-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00995	Sec1	Sec1 family	Family	Interproscan
PF13676	TIR_2	TIR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000157	Domain	Toll/interleukin-1 receptor homology (TIR) domain	Interproscan
IPR000225	Repeat	Armadillo	Interproscan
IPR001619	Family	Sec1-like protein	Interproscan
IPR001660	Domain	Sterile alpha motif domain	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR013761	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR027482	Homologous_superfamily	Sec1-like, domain 2	Interproscan
IPR035897	Homologous_superfamily	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Interproscan
IPR036045	Homologous_superfamily	Sec1-like superfamily	Interproscan
IPR043127	Homologous_superfamily	Sec1-like, domain 3a	Interproscan
IPR043154	Homologous_superfamily	Sec1-like, domain 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46270	ARMADILLO-TYPE FOLD-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_004409-T1 global RNA-seq network