Gene detail

Detailed information of OS493_009735-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_009735-T1	SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN	scaffold_23	2091411	2137217	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_009735-T1

ATGAGCGAGGTGGACCGTGTGGTGGAGAAATGTTATCACGTGCTGGAGGGGACGGAGGTGGAGCTCGAGGACGCTCTGAGGAATCTAAACCGTCACGCTGGAACCATCAAAGAAAGCGGACCAGGCTCGGTTCCAGATCTCGCCAGGCAGCTCACGAGCAAGAGAATCGCTGTAACTGTGATCAGGAAAGACATGGATGATTATGAGGATCGTATGTCGGACATTCGTGGGAAGGTTGATAAAACTCGTCAGGTTCTCGAAGGAGAAATCCAGCGGCGACAGCAGATGAAAAAAGATTTTGAGACAATTCGAATGTGGGTGGTCAAGATTGAGGTACTCATCAACTCTAAATTGACCAAACACGAGGAGATCGACGAGAGAGAAATTAAGGCTCTAGAAGAAGAATTTTCCCTAAATCAATCACTCGTGAACTCGGTTGAATCCACGTGCAATGAACTGAGCAAGACGCCCAAAGGTTCTGCCTACCTCAAGTTAATTAAAGAACTGGAGCAGCTCCGAGCAAAATGGATGACAATCCACACCAAGTTTGAAGAACTTAAAGAACAGCCTGGCAAGAAACTAGAGGCGGACTTTGACACGCTTCATGGTCAGACATTGACAGATTTGGACAAAATACAACGAGGTGTGAAAAAGCTCAAGTTAGAGTCTGCGGAGCCGAGGAATATCAAGAGCCTTCTGGATAAATGTTTGTCGTACAAAGATGAGCTGTCCACGATCAAAAAAGACTTGGAACAAGTCAGGAAGCTGGGGTTCCAGATTATGGAGCGAGCGCCAGAAGAAAAGAGGACTGGGGTCGACAGACGAGTCGAGGAGGTGGTTCATGAACACAGGGAGCTGGAGAAGAAAGTTCGAACAAAGGAGGAGGCGTTCCGTGAAGCATTGCCGTTAGCTGAACGACTGGAAAGCGATATGAGCAATCTGGAAAACTGGCTGGAGGACAAGACCAGTGATGTGAAGAGGAGAGAAGAAGCAGGCTTCCCTGAAGATGTGGATGCCGAGATTAAGTGGAATAGGGGTCTTGTACAAGACGTCACAGGCAAAATGTCCGACGTACAACAACTCACACAGGTCGGACGAGAGTTGGTAGACCTGTCCGAAACAGGCCAACTCGAGAACTTAGAAGACAGACTAACACGCATCAACAATGCATGGGAAGATTTGAGTTCGGCCGCAGAACAGAGAATGACGACTTTGCCAAAGTACAAAGCCAAGCTTGCAGATTTCGAAAAATCCGTGGACCAGATGAACCAATGGCTGGAGGACATGGAGAAAGAAACCAACAAAGTGCACCCCAAGGAAGAGGAAGTGGATTTAGCCAAAAACAAAATTGATGAGATACAAGAGAGCATCAAGAACCGTGAACCACAGCTAGACCTGATCAGGAAACAGAGCGGCGAGTTCGTTCATCGTGGCCGTCAAATCATGGAGCCGTACAAGCGACTGCTCGACAGACGCTGGGAGGATCTGTCCTCGCGTATCGGCCAACTGGAGGAAGAGTTAGAGGACACGAAAAAGAAGGCTGAGGAAGCGAGAGCTAAAGGAGGACGAGTGGAAACAGAGATTATCGTCACGGAGCGCAAGACAGTCTCGTCGACACCCGGAGGTTTAATTGAAGAGTTTTTATCAAGAGAAGAAAGAACAGAAACCGACAGTGGACAACCAATTATTGAGACCATAACCACTCATAGGACCTACACTACAAACACTGCTCCAGACTCCTCACGCTATGTTGATGACGACTTCCAGAGGCGTTTGGATCAGATCTTGTTGGATGTAAAAGATCTTGAAGACCTCATCAATGACATCCAGTCACCCAAGAAGACGACAGAGAATGAAGTGAACGAGAAAATCAAGGTCGCAGAGAATCAAGTCGACAACCTTCAGCCGCGCGTGGAACATCTGCTGAAAGAGAGCAAAACTCTTGCTAACAGGGAGGGGGCACGGGGAGATCATATCCACCAGTCGTTGCTTGACCTGTCCAGCCGTTGGCTAAAGGCCTGTGACGAGGTCGACAAACAGAAGAAGGCGATTCGTATCGTGCCCAACTGGTATCAGTTTAGGAGCAACTTGGATGACATCGATGGGTGGCTCAAGAAGATGGAACAGGGCACGGAGTTAGAAGTGCAGCCAGAGGAAATCGAGGAGCAACAAGCCAAGTATGAAATGGTGTTCAAAAACATCGAAGAACTTGACAGACAAGGGGTGCAAATCCTGAGATGCTACCTCTTACCGCATCACAGTTCACACACGGGTGACGTAAAGGATGCCGGGACACAGTCCAACGTGTCCGTCGCACTGTTCGGCGAGAAAGGAAAATCGTCGAAACTTCGCCTGGACAAATCCGAGACGTATAACACCAAGTTCTACCGCGATCAGCTCGATATCTTCACGGTTTACAACGTGCCACATCTGGGCGACTTGCACAAGATCCAGGTTTGGCACGATGGGACTGGGCACAAGCCTGACTGGTTTGTAAAGGGATTTTACATCGAGGATAAGTCCACTCGAAAGGTTTACTTTTTCAATTGCAACGCGTGGATTGGTCGAGATGCTGACATGCAAGATATCAAGTGTGAAGGTTATACCCTGCCTGAAGAGGGCGAGGATGTCATGACCAAGTCCTCTCTAGCGCGCGTCCGCTGGCAAGTGACTCTGGTGGAGCATGAGCCTGCACAGACTCCCGGATGGAAGCTGATTGGGGATATTAGGAAGCTGTCAGATGAAGTTCATGAGGTGGAGCTACTCTTGGAGTCTCCTGAATTACAGAAAGCAGATTTTGAAGACTTCTCCAAACAGGAGGACAAGTTAAAGCTTATTGGCGAGAAGCAGGAAGACCTCGAGCCTCGTGCAACAGAGGTGTTGTCACGCAGCGAGACAGTTCAGTCCGCATGCGCTGAAAAGGAGTACGATGCTGTAAAGAGAGCCGCTAGCAAGTTCAGATTACAGTGGAATAACCTCAACCAGGATTATAAAGCTCGTTCGCTTCGCTGGGAGAAGGCAGTAGCGGTGTGGAGACAGTTCCACTGTGATCTTAAAGACGTGACGTCATGGATGACGCATGCGGAGAAGGTTCTCGATGACACATCCGGGGAAGTTGAATTCAACTCCGCCAAAAAGGAACAAAAGGGACTGGAAGATGGCATCGCTCGCCATCAGAGCACAGTGAATGTCATGAACACCGGCGGACAAGAGATTATCAGTAAATCAACAACTGTGGAGGCTGACATGCTCCGTGATAAATTAGCCACACAGAACAGGCGCTGGGAGTCCATCTGTAATCAAGTCACAGACAGGAGGGATAGATTCAAGGAGGAAGCCATGCAGATAGAGGAGTTCTTGGAGGAGAGCAGAGACCTGCTGCAGTGGATGGACGAAGCGGACACTGAACTGCAGACCAAGGATCCATCACCTGCTGATGAGGATGGATTAGAGGAACTGCTTGATAAGATCAAGAGTATTCAACAGGAGCAAAACAACAGAGAAGATTCAAAGAACAGCATCCAACAGACAGCGGAACGACTTCTGTCCAAACCCACTATCTCCAAACCCAACTCTGAAACCATCAGAACGAGGCTGGACATCCTGCTCACGCGCTGGGACATCCTGCGCGCAGATGTCGCGACACGCACGCGAGGAGTGGAGTCCAAACTAAGACGCGTGTCCGAGTTCCTTGGGGATCTTGAAGAGCTAAGCTCGTGGGCTTCGACGACAAGGGAATTGTTGGAGAAACAAGAAAGCGGAGGCTACAACCAAGAAGTTGTCGATCCTAAGACTGTTCAAGAGTCGCTGAAGTCTCGTCAACCGAAGCTTGACACCATGAATGAAAGCATGGCGCGCTACAGACGCGAAAGCAAACTCGATGGGAACCAGGTCCCCAAGCCACTGGAAGTCAAGGTCAAGGCGCTCAACGATGACTGGAGCCGAATTGCGTCACTTACCGCCAATCTGTTCGCGGCCCGCGTCAAGCCACGTAAAGTTGTCGAGGAAACTGTTGTTGAGTCGAAACAGCGGTCAGTTCATGCTGGCGTACCACTTATAATGGAGGACTGGAGAGAGGAGCACGCATCTCCATGGCCGAAGTTCGATAAAGCAGTGTCTGAACTCCATGACTGGTTAGACACCTTGTCGGAGATGATGAAGACGGAAAAGATTGTGCTCGGAGATTCTGAGGACATGGATGGACTTCTGGAGAAGCAAAAGTCAATAGATGATCAGCTGCAAACCAAACAGCATTTGTTGGACGAGATTGCAGAGATGGGACAGACGCTTGCTGACGATGCACAAACTGAGGAAGACAAGTTCTTAATTGATAGCAAGGTCAGCAAGTTAAAGGGACATTGGGAGAACATCGTGGACAACTCGGGCGTGTGGCGAGGACAAATCGATTACTTGATGGAAGAATGGAAGAGATTCGTGGAGCTTCGCGAAGAACTTCTCGAGTGGATCCGGAAAGCCGAGGCTTATCTCGAGAGAGACGAGAACGTGTATGGTTACACGGTCAGCGAATTGGAAGAACAGATTGATAAGCACAAGGAGTTCGAAGATGATGTGGAAAATTGGCGAGGCAGTATCAGCGCCGTGAACCAATGCGGCGAACACTTGGTGCAGGAGTTCCCTCATTACGAATCTGGAGAACTGAAAAATTCCATGTCAGAGGTCAACGAGAGATGGACTAACATCACCTCCAGATCTGACTCTCGTAGGAAGCACATAAAGGAAGCATTTGATCGCATGGTGCGATTCCACGAAGACATGATCAACGCTCTGACATGGCTGACGTCAGCCGAGTCTAAAGTGGCGGAGCTGGACAGCGCTGTAGAAGCAACAAGTACAGAGGAACAGCAGGACATGGAAGCTCTCAGAAAGGAATTAAAATACCTTGAAGATGACATCAATGCACATCAGGAAATGTTTGCCTCGCTGAACGAGAACGGTCAACTGATTATGACCGAGATGGAGCCTGGGGACGTGTTAACGGCAGTGCAAGCCAAACTTGATGACATGAATGACAGGTGGCAATCACTCAACGTACGCACGCTGGACATCCGTGACCGACTGGAGGACACTGGTACCGAGTGGCGGCAGTTGCTGATGGACTTACAGGAGATCATCGATTGGATTGCACGTGCTGATCAGGAGCTAACTCTTCAGCAACCAATAGGAGGAGACCTTGAGAGCGTGCAGAACCAGAACGAGATCCACCAGGCGTTCAAAGGCAAACTTAATGTAAGGCGACTGGTAGTGGACCGAGCACTAGACTCTGGCCAAAGAGTTATGGAAGAATATGAAACAGACAGATCCGCTGACGAACCAAGGGATTCACCGCGGGCTCGCATTACACAGAATCTCAAACGGCAGATCGATACTGTTAGTGAACGCTGGGCAATGTTGTGCCAGCGATCAGAAGATTGGCAACAATGGATTGACGAGGTTCTCAGGAAGTTGCAGCTGTTCCAGGGCCAGATGGAGGAGATAGACGTGCGGCTGGTTGAGGCCGAGCAAGTCAAATCGAACTGGACACCAGTGCAGGATCTTGTCATAGATTCGCTGTCAGAACAGATGGATGACCTCAAGAATCTTCAGGAACGAATAGCGTCTCTTCAGAATATGTTCGAGACTCTCAGCAGCACAGAAGGCGAGCTGAGACGAAAGGGCGTGTCCCTCTCGCCAAACCTGCAAAACAGGATTGACCAGTTGTACCGGCGATGGAAGCAGTTGCAAATTCAACTGTTGCAGAGACAACACGCCATGCAAGAGGCGTACTCAAGCTTTGACATGTCCTCCGTACAGGGACTGCAAGCGAGTGTCGAGCCGCCCTGGGAACGAGCGGTAGCACTGAACAAGGTTCCTTATTACATCAATCATAAGACGGAAACAACGCAATGGGATCACCCGAAAATGACGGAACTTTACCATCAAATCGCGGAACTGAATGACATCAAGTACAGCGCTTACAGAACAGCTATGAAGCTGCGTTGCATCCAAAAGGCTTCCAATCTGGACTCTGTGAGTCTGACCAACGTCATTTCAGCTTTGGAGCAGCACAATCTAAAGCATGCTTCTAATGAGGCGCTTATTGGTGTCCCGGAGATGGTGAAGGTACTGACGACTGTCTACGAGAACATTGAGGTACCGCGGATTACACGGTGA

Transcript

OS493_009735-T1

Protein

OS493_009735-T1

MSEVDRVVEKCYHVLEGTEVELEDALRNLNRHAGTIKESGPGSVPDLARQLTSKRIAVTVIRKDMDDYEDRMSDIRGKVDKTRQVLEGEIQRRQQMKKDFETIRMWVVKIEVLINSKLTKHEEIDEREIKALEEEFSLNQSLVNSVESTCNELSKTPKGSAYLKLIKELEQLRAKWMTIHTKFEELKEQPGKKLEADFDTLHGQTLTDLDKIQRGVKKLKLESAEPRNIKSLLDKCLSYKDELSTIKKDLEQVRKLGFQIMERAPEEKRTGVDRRVEEVVHEHRELEKKVRTKEEAFREALPLAERLESDMSNLENWLEDKTSDVKRREEAGFPEDVDAEIKWNRGLVQDVTGKMSDVQQLTQVGRELVDLSETGQLENLEDRLTRINNAWEDLSSAAEQRMTTLPKYKAKLADFEKSVDQMNQWLEDMEKETNKVHPKEEEVDLAKNKIDEIQESIKNREPQLDLIRKQSGEFVHRGRQIMEPYKRLLDRRWEDLSSRIGQLEEELEDTKKKAEEARAKGGRVETEIIVTERKTVSSTPGGLIEEFLSREERTETDSGQPIIETITTHRTYTTNTAPDSSRYVDDDFQRRLDQILLDVKDLEDLINDIQSPKKTTENEVNEKIKVAENQVDNLQPRVEHLLKESKTLANREGARGDHIHQSLLDLSSRWLKACDEVDKQKKAIRIVPNWYQFRSNLDDIDGWLKKMEQGTELEVQPEEIEEQQAKYEMVFKNIEELDRQGVQILRCYLLPHHSSHTGDVKDAGTQSNVSVALFGEKGKSSKLRLDKSETYNTKFYRDQLDIFTVYNVPHLGDLHKIQVWHDGTGHKPDWFVKGFYIEDKSTRKVYFFNCNAWIGRDADMQDIKCEGYTLPEEGEDVMTKSSLARVRWQVTLVEHEPAQTPGWKLIGDIRKLSDEVHEVELLLESPELQKADFEDFSKQEDKLKLIGEKQEDLEPRATEVLSRSETVQSACAEKEYDAVKRAASKFRLQWNNLNQDYKARSLRWEKAVAVWRQFHCDLKDVTSWMTHAEKVLDDTSGEVEFNSAKKEQKGLEDGIARHQSTVNVMNTGGQEIISKSTTVEADMLRDKLATQNRRWESICNQVTDRRDRFKEEAMQIEEFLEESRDLLQWMDEADTELQTKDPSPADEDGLEELLDKIKSIQQEQNNREDSKNSIQQTAERLLSKPTISKPNSETIRTRLDILLTRWDILRADVATRTRGVESKLRRVSEFLGDLEELSSWASTTRELLEKQESGGYNQEVVDPKTVQESLKSRQPKLDTMNESMARYRRESKLDGNQVPKPLEVKVKALNDDWSRIASLTANLFAARVKPRKVVEETVVESKQRSVHAGVPLIMEDWREEHASPWPKFDKAVSELHDWLDTLSEMMKTEKIVLGDSEDMDGLLEKQKSIDDQLQTKQHLLDEIAEMGQTLADDAQTEEDKFLIDSKVSKLKGHWENIVDNSGVWRGQIDYLMEEWKRFVELREELLEWIRKAEAYLERDENVYGYTVSELEEQIDKHKEFEDDVENWRGSISAVNQCGEHLVQEFPHYESGELKNSMSEVNERWTNITSRSDSRRKHIKEAFDRMVRFHEDMINALTWLTSAESKVAELDSAVEATSTEEQQDMEALRKELKYLEDDINAHQEMFASLNENGQLIMTEMEPGDVLTAVQAKLDDMNDRWQSLNVRTLDIRDRLEDTGTEWRQLLMDLQEIIDWIARADQELTLQQPIGGDLESVQNQNEIHQAFKGKLNVRRLVVDRALDSGQRVMEEYETDRSADEPRDSPRARITQNLKRQIDTVSERWAMLCQRSEDWQQWIDEVLRKLQLFQGQMEEIDVRLVEAEQVKSNWTPVQDLVIDSLSEQMDDLKNLQERIASLQNMFETLSSTEGELRRKGVSLSPNLQNRIDQLYRRWKQLQIQLLQRQHAMQEAYSSFDMSSVQGLQASVEPPWERAVALNKVPYYINHKTETTQWDHPKMTELYHQIAELNDIKYSAYRTAMKLRCIQKASNLDSVSLTNVISALEQHNLKHASNEALIGVPEMVKVLTTVYENIEVPRITR

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00397	WW	WW domain	Domain	Interproscan
PF00435	Spectrin	Spectrin repeat	Domain	Interproscan
PF01477	PLAT	PLAT/LH2 domain	Domain	Interproscan
PF09068	EF-hand_2	EF hand	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001024	Domain	PLAT/LH2 domain	Interproscan
IPR001202	Domain	WW domain	Interproscan
IPR002017	Repeat	Spectrin repeat	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR015153	Domain	EF-hand domain, type 1	Interproscan
IPR018159	Repeat	Spectrin/alpha-actinin	Interproscan
IPR036020	Homologous_superfamily	WW domain superfamily	Interproscan
IPR036392	Homologous_superfamily	PLAT/LH2 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11915	SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0030036	Biological Process	actin cytoskeleton organization	Interproscan
GO:0030054	Cellular Component	cell junction	Interproscan
GO:0030864	Cellular Component	cortical actin cytoskeleton	Interproscan
GO:0042995	Cellular Component	cell projection	Interproscan
GO:0051015	Molecular Function	actin filament binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_009735-T1 global RNA-seq network