Gene detail

Detailed information of OS493_014888-T1 in Lophelia pertusa

Genomic Location: scaffold_42:2491304...2495638
NR annotation: KAJ7334564.1, DNA-binding transcription factor [Desmophyllum pertusum]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
P87377	T-box protein VegT-A OS=Xenopus laevis OX=8355 GN=vegt-a PE=1 SV=2
P70327	T-box transcription factor TBX6 OS=Mus musculus OX=10090 GN=Tbx6 PE=2 SV=2
D3ZJK7	T-box transcription factor TBX6 OS=Rattus norvegicus OX=10116 GN=Tbx6 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00907	T-box	T-box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018186	Conserved_site	Transcription factor, T-box, conserved site	Interproscan
IPR036960	Homologous_superfamily	T-box superfamily	Interproscan
IPR046360	Domain	T-box transcription factor, DNA-binding domain	Interproscan
IPR001699	Family	T-box transcription factor	Interproscan
IPR008967	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11267	T-BOX PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0045893	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0001708	Biological Process	cell fate specification	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10180	TBX6; T-box protein 6	-	Messenger RNA biogenesis	ko03019	deepkoala

Expression pattern