Detailed information of OS493_020913-T1 in Lophelia pertusa

Genomic Location: scaffold_79:53550...56810
NR annotation: KAJ7390893.1, hypothetical protein OS493_020913 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P49709Transcriptional regulator Myc OS=Carassius auratus OX=7957 GN=myc PE=3 SV=1
Q90342Transcriptional regulator Myc-2 OS=Cyprinus carpio OX=7962 GN=mycb PE=3 SV=1
P01110Viral myc transforming protein OS=Avian myelocytomatosis virus 29 OX=11868 GN=MYC PE=3 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00010HLHHelix-loop-helix DNA-binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002418FamilyTranscription regulator MycInterproscan
IPR036638Homologous_superfamilyHelix-loop-helix DNA-binding domain superfamilyInterproscan
IPR050433FamilyMyc family transcription factorsInterproscan
IPR011598DomainMyc-type, basic helix-loop-helix (bHLH) domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45851MYC PROTO-ONCOGENEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0046983Molecular Functionprotein dimerization activityInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K09112SMYC, MYCS; myc-like oncogene-Transcription factorsko03000deepkoala

Expression pattern
 Expression trend for OS493_020913-T1 global co-expression network
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