Gene detail

Detailed information of PMEG.utg000092l.4 in Placopecten magellanicus Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PMEG.utg000092l.4	RING BOX	chrom06	57928840	57931348	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PMEG.utg000092l.4

ATGGCAGCGGCTATGGACATTGACGATTCAGAACTGGGGGAAGGTTCAGGAAATGGAGTCGATAAGTCAGGAAAGAAACGATTCGAAGTCAAAAAGGTATCGAAAATGTCAACTTTTAACTATATAGACTCATAATCATTAAAAATGTCTTTACAGTCCGTAATTTTACCATTTAAACAGCTTTGTGTTTTCTAAAAATAGGAACCCAAAAATAGTTTTGCGACTCATTCCCGTAGGTAGTCCGAGTTTCCTACTGCTATATGATCCCAACACCAGACTTGAGACATTTTGACTGATAGATGACCAGTAAACGAGGATCAATTACAGAAATTAATTCGTATAGCAAATTAAATAAAAATTATCATGAAAGTTAAAAGATATTAATTTTCCCGGGGATGTATCCAGGTGTGACCATAATCCGTTCACATAGCGATAAAAGCAGTTTCTGTAAATAAACTACGAACATACAGGTAACAATACCCCATCTGTTTTATAGAACACATCATCCCACGTAAAACACCATTCCACAATTGTTGAAATTCAAACCCGATCCATTCCGACAGCTATTTGTGTGTCTCCACTGTGAGCAGCCATTTTTTTAACACCGACCCCTAAATACGTTCACCCGGATGTCAACGTCTTTCAGACGTTTTTCTGAAGGCCAAGCCATATAAAAATTGGCAAGGAAGGACATAACAACTAAACCATGATGTTACTAAAGTTTGATCATGTTTTTTGTTTCAGAAAATACTAAGAACGTGGAGAGATGAAACTTAATCAGCAACATGTCAATTTATAATGATACAAAATTAAGGAATTTATTAATCCATATATTTTATTATTTTACATGAATTAAATATATTTTTGTTAGATCAAACAATTAATATATAGTTATCAAAAAATTCAATGGGTCAAAATGTTATCAATCTATAGAATTAGCGCTGGTAATACTGCAAGTTTGTTCAGGAGCACGTACTAACATCGGGAAAAAATGCGTAAGAAATGCGCGTTTAAAAAATCCTAAAAACTATTTGTTTGGCCTCAACAGTGCTGAACTTTGATTTGTGACATGCGCAGAGGATGTAAACACATCGGAAGAGCATTTTTGTATTTCATCAAATGTTGATTTAACACCATTTTAGGGCTACGGAACTTGATCTAAAAATAGCATTAGCGAATTGTTGCAATTTTTAAGTGATCCATAAAATGTAAATTATTTTATTTGTTTGGAACGCATTTCGCCGTTTTTTTTTTGCATTGTCGTCTGCATATATATCTACAGATAAATGTGTAAAAATCTGAGAGGTCAGCGATGACGCGTTAAGAAGTTACAGCGCATGATCAATGGTGAACGGATTTGAGGTTTGAGACGATATCCCTGATTTTCCTGCCAGATTAAATATTTGCTTGTTTTACATGGAATTATGATTATTATTTTACCTTTTTTTCCAGTGGAGTGCTGTAGCTTTGTGGGCATGGGGTGAGTATACATATTGTAAATAATATAATATGTTTCATTTATTGTTTGCATTTTAAAATGTGAATGATATGTCTTTCATTTGATAGAAAAGTGAAATAATTTTCATGATTGCATACAAAATGTCAATTGAGAAATTTAATTTAGTGTGGCCGTTACAGGTGTATACAATACCTTTTAAGGCTAAGTTATACATCTTAACCCTACTGGAGAAAACGTACATTACATTCTTTGCTGGGACTCCATAAAATATTCTACAAAATGTCTTCTTTATGAATACAATATTTGTAGGATTTAAACAAAAGACATGCACAAATTGTAATTTCTATTTTCAGATATTGTTGTGGACAACTGTGCTATTTGCCGAAATCACATCATGGACCTGTGTATAGAATGTCAGGCAAACCAGGCCTCCGCCACTAGTGAAGAGTGTACAGTGGCCTGGGGTGTTTGTAATGTGAGTATGTGGGGGGGGTTGAAGTGGTGTGGTATTTGAGTATCATGTAAAGTGAGTTTTTACCATATACGTGTACCGGTATATAATTTACTTCTCACCGGTCTAGGTATCTAATGTGAGTATCATCAGCCATAGTCCATACTCTGGATGCTGAGACTGCTCTGTTACTAAGGATTCTGCCACCTATGATTCTGCTGGTTGATCAGGATCATCAGCAATGCTGCATTGCTCTGTGACCAAAGGTGTCTATAATATCATGAGTACAACTGTATGTATCACCCACAGTAAACTGTTGCCAGGTAAAAAAAAAGTAAACTTTATTTATTTTACAACAATTGCTAAACAAGTTATAATAACTTATATTAATCACTCTTGTTGGCCCGGATGGAAGCGTGCAAGGGGTCTTACTGTGGGAGGAAACCGGAGTACCCGGAGAAAACCCACGTGGTCGGGCAGGTGACCCCATACCTTTTCACGTCCAGTCGGGGAATCAAACCACCCCAGGTTGTGCGGGTCTGTTAAAAAAATTTGGTCTCTGTTATTTGCTGCAGCTGGTTGAGTATTATTATCAGTAGATGGCAGCGGCTATGGACATTGACGATTCAGAACTGGGGGAAGGTTCAGGAAATGGAGTCGATAAGTCAGGAAAGAAACGATTCGAAGTCAAAAAGTGGAGTGCTGTAGCTTTGTGGGCATGGGATATTGTTGTGGACAACTGTGCTATTTGCCGAAATCACATCATGGACCTGTGTATAGAATGTCAGGCAAACCAGGCCTCCGCCACTAGTGAAGAGTGTACAGTGGCCTGGGGTGTTTGTAATCTGGTTGAGTATTATTATCAGTAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12678	zf-rbx1	RING-H2 zinc finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR024766	Domain	Zinc finger, RING-H2-type	Interproscan
IPR051031	Family	RING-box E3 Ubiquitin Ligase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11210	RING BOX	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0031461	Cellular Component	cullin-RING ubiquitin ligase complex	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0097602	Molecular Function	cullin family protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-