Gene detail

Detailed information of Paelopatides10567 in Paelopatides sp. Yap Gene info

Gene ID	Annotation	Contig	Start	End	Strand
Paelopatides10567	TRANSLATION ELONGATION FACTOR-RELATED	ctg2113	4511	45325	+

Gene Structure

More details in Jbrowse Sequence

CDS

Paelopatides10567

ATGTCTATTCTCTGCTATTTAGGAAAGACAACCCTAGCTGATTCTTTCATTTCGAGCAACGGCATCATTTCATCCCGCTTGGTAGGGCAGCTACGTTACCTAGACAGCCGTGAGGATGAACAACTCAGGGGTATTACTATGAAGTCCAGTGCAATAGCTTTAAGCTTTAGCCAAGAAAATGAAGAATATTTAATAAACCTAATAGATACTCCAGGTCACGTCGACTTCTCCAGTGAAGTGTCTACAGCAGTACGACTCTGCGATGGTGCTCTTGTGGTGGTTGATGTGGTTGAGGGAGTTAGTCCTCAGACTCACATTGTCCTACACCAGGCTTGGCTGGAAGACATCAAACCATGCCTGGTTCTTAACAAGATTGATCGGCTGATTACAGAGTTGAAATTTACTCCTTTGGAGGCTTATCTTCATCTCCAGCAGGTCTTAGAGCAGGTGAATGCTGTAATGGGAAACCTCTCTGCATCTGATATATTGCAGCAAGCATCCTCTGTAAGTAACATATCGTTTGATTATTTCTGTTGCTTTTATTTTTACCCTACTCGTGATACTATCTTTGATGATAGTCTTGACATTTTTAACTTTGAAAATGATCTGAAAGATATCCAGTCATTTTACAAGCATGTCAGTAGCAGTATTTACGGTACCATCTCTGAAGCAAATGATTTAGCAGAAATAACAAAGCTATATGTAGACCCCCACTACCAACCAAATCTCCAGAATTTGTGCGATATGGATATTCTGCTCAAAAGGCCAACAAAAATTGAAGATGGCCAGACATTGAAGTTATCAGGTCAGACATTTGACTGGAGCTCTGGACTAGAAGACGTTGACGATTCTAGTATATACTTCTCACCAGAAGAAGGAAATGTGATATTTGCCAGTGCATTAGATGGTTGGGGATTTGGTATTGAGCAATTTGCAGACCAATATGCTAAAAAACTGGGTGTGTCTAAAGTGGGACTCTCCAAGACCCTGTGGGGAGACTATTACCTGAACTCGAAGAGCATGAGAGTAATGAAGGGTGCTCAGGCTAAAGGAAAGAAGCCGTTGTTTGTTCAGTTTGTTCTTGAGAATCTCTGGGCTGTTTATGATGCTGTGATACTTAACAGGGATGAGAGCAAGATGGAGAGGATCATCCAATCACTGAATCTCAAACTGGCTGCTAGAGATATGAAACAGAAGGATACCAAACTACAGCTCAAAGCTATTTTAAATAAATGGCTGCCGGTGACAACATGTGCATTGAATATGATCTGCTCTCACCTACCCAACCCTGCAGAAATCAGCGACAAACGAATTGAGAAGTTGCTGTGTTCCAGTGGGAGGAGGTTTGACTCTTTACCAGAGGACTCTCAAAAACTTAAAGATGGTTTCCAGAATATCCAGAGTAACATTAATTCACCAGTGGTGGCTTTTGTCTCAAAAATGTTTGCAATTGACAAGAAGTTTCTTCCGCAGAACAAACACAGGCCATTAACAGTAGAAGAGCTTGCCGAACGTCGACAGGAAGTTAGACGATTGCATTTGGAGAAACAAAACTTGGCAAGGTCACAAATACCACAAGGAACCACAGATGAAACTAGAAGCATATCCATCATTAAAAATGAAAAGGTTGACACTGGAGAAGACGAGTACACCTCGGATGTAACGGAAAAAGACGAAAACAACGGTCAAGTGTTTATTGCATTCGCTAGGATTTTCAGTGGCGTTATTAGAAAGGGCCAGAAGGTTTATGTGCTGGGCCCACAGTATGATCCTAAGCAAGGCCTTGAAGAGGGTGATGAGAGTGACTGGAAGAAACATGTTCATGAAGTGATCGTTAGTGATCTCTATCTCCTGATGGGAAGAGATCTGGAAGACGTGGATGAAGTCCCCGCCGGAAACGTATTTGGAATGGGTGGATTGCAGGACATCATTTACAAGTCTGGTACAGTTTCAAGCACGCTGGCTTGTCCTGCTTTCACCGACATGAACTTTGCAGCAAAACCGATTGTTAGAGTTGCTGTTGAACCAAAGCATTTGAGTGAGTAA

Transcript

Paelopatides10567

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00009	GTP_EFTU	Elongation factor Tu GTP binding domain	Domain	Interproscan
PF03144	GTP_EFTU_D2	Elongation factor Tu domain 2	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000795	Domain	Translational (tr)-type GTP-binding domain	Interproscan
IPR004161	Domain	Translation elongation factor EFTu-like, domain 2	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan
IPR009000	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42908	TRANSLATION ELONGATION FACTOR-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0042256	Biological Process	cytosolic ribosome assembly	Interproscan
GO:0043022	Molecular Function	ribosome binding	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-