Gene detail

Detailed information of Paelopatides13518 in Paelopatides sp. Yap Gene info

Gene ID	Annotation	Contig	Start	End	Strand
Paelopatides13518	PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN	ctg25847	13069	29581	+

Gene Structure

More details in Jbrowse Sequence

CDS

Paelopatides13518

ATGCTCGGCTCCGACCTCTTCAATGACCAGTTCCAAACTGGCAGAGGAAGTCAAACGCCTTCAGGAGGCAGTAGCTACCTCATTTGTGACGCTACCGAGCACGGAAGCCGCCTCCCAGACCCCTTTGACGTCGCAGTGACGCAACCACCGCCGTCCTCAGGGACGAGAACGGGCGTCCCGACAGGGTCCCTCTCGACGCGGTTCTACCACGCGGCAGACCACACGAGGTTGTTCGTCCTTCCCAGAAGCCCCTACTCGGCGGCTTCTAAGGATACCATTTCTCGCTGGCTGTCGGAGATTATCACACCGCACGCCGACCCTAGAAAAGATATCTTCAGTTTTGACAATCTCCTGACATCGTTGGAATCTTTAATTAAGACAGATGGCTGTAAGAAGCTACTCAACTACTTCACAGTTCCAGGTCATACATCAAAGATCATCCTTGACAGTGAGGTACCCTCTGCATCTCTACTTAACCATCTCAAAGAGACAGGGGATGTTTCTGCAAAAGACACAAGTCATTTAATGAAAGCATGCTCTGATGATGCGCTTAATAATGCAGTGGAGTTAATATTTCTTTATCAAAATATTCAATGCGCGCGTTTAGACTTCGTCTCGGGCCGCCTGACTCCATCCGAGGAACGCGTGTCCTCTCTGGTCAGGGACGTCTCTCTCTTGCAGACCGGGCAACCCGCCACGGCCCATACGTGGTTGAGGGTGCTAGGTCGCATGGCGAGCCTGACGGACGTCGTCCCCCTTTGCCGCCTGCGCATGTGTCCTGTCCAGTTCCACCTACTCGCGCATTTCAAGCCCCATCTGAGGGATCTCACCTGTGTGATCCCCCCGACAGCGTCACTCCAACCACACTGGCAGTGGTGGAGCGCGGAGACCAATCTCCTCGCGGGTGTACCGTTCCCGATTCAGCGGAATCCGATCACGGTAACAACCGACGCCTCCCTGTCCGGCTGGGGCGCTGTTTGCGAAGTGCGGACGCTCTCTGGACTGTGGTCAGCCCAGGAGCGCACGCAGCACATCAATGTGCTGGAACTCGAGGCTATCGCGAGAGCCGTCAGGCGCCTGACGGACTTGGTACAGGGCAAGCATCTCACAGTCTTCACGGACAGCACTACCGCAGTGGCCTACATCAACAGACAGGGGGTCGCACTCCCCCAGCCTGTGTTCCGTAGCCTGGTCCCTTCTGATGTGGTGCCACAGTCACGACATCTTGATAAGGGCCTCCCACATTGCGGGCAAGGACAACGTGTTAGCGAACGCGTTGTCCAGGGGGCGCGCCATTCAGGGCGAATGGGAGCTAGCACCCAGGTGGACGAGGTGGCTGTTCACCGAACTAGGCAGACCTCTCGTGGACCTCTTCGCAACAAAAAGCAACTCCAAGCTGCCAACTTTTTGCTCGAGGAGGTTCCACCCCCATGCTTGGGCGATGGACGCCATGTCCATCTCATGGAACGGACTGCACGCCTACGCGTTTCCCCCGTTCAACATGATCCACAGGGTGCTTCTCAAGCTCCGATCGTCCTCGGCCCACCTCCTCCTGATCGCGCCACTATGGCCGCGCCAACCATGGTTTGCGACCCTACTGCACCTGGTGGTGGCCGTCCCGAGAGTCCTTCCGGCCAGACCGGACCTCGTTTCTCAGGACAAGGGCCAGGTCCTCCACCCCAGGCCGCAGGACCTGCATCTTACTGCGTGGCGACTGTCCGGCGTGCCTTCCGAGCACTCGGACTTCCTGCGGACGTTGCGTCCTTGGCAGCCGACTCTAGACGACCTTCCACCTTCCGGACTTATGATTCTAGACTGTCTAGATTCAACCGTTGGTGCTCAGAGAATGCTACTACTTCCACTAGTGCGTCTCTAGTCCAGGTCTCTTCCTTTCTTAAGCTTCTGTTTGACGAGGGCAAGCACGTCAACACCATCAAGAATTATCGGTCAGCCATCAGCGCAATCCATCTGGGATTCGCCGACGGTTCCACGCCAGGCACGAACAGCGTCCTTTCGCACCTGGTAAGAGGCATGGCACTCCGCAGGCCAGTGGTCAGACTTCTGACCCCCCCTCCTGGTCCATTAACGCTGTACTGA

Transcript

Paelopatides13518

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02899	Phage_int_SAM_1	Phage integrase, N-terminal SAM-like domain	Domain	Interproscan
PF17917	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004107	Domain	Integrase, SAM-like, N-terminal	Interproscan
IPR010998	Homologous_superfamily	Integrase/recombinase, N-terminal	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR041373	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR35617	PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-