Gene detail

Detailed information of Paelopatides15375 in Paelopatides sp. Yap Gene info

Gene ID	Annotation	Contig	Start	End	Strand
Paelopatides15375	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	ctg29338	24216	26614	+

Gene Structure

More details in Jbrowse Sequence

CDS

Paelopatides15375

ATGCAGTTGTTACTGACTGGTTCAGCTAAATCGTGGTTCTCCGGGCTAGACAGCGACACCAAGAAGGATGATCCAAGCGAAATATACAAGGCCTTCGAGAAGAATTTCGCGGAGGGAGCTTCGTCGTGGCTTTTGGAGAATCGCTTGTGGACCCGGACCAAGCTACCAACGGAACCACTCGACCTATATATTCGCGACATCGAAGACTTGTGTCAGCGATTGAATAAATCTAAAAAGGAAATGGTTGTGATATTCGTGCGAGGATTCCTACCGCATATTCGTCGCCAGGTCATACAGAAGGATCCCGCAGACTGGTCAGAGGCTATTCAATCGGCTCGCCTGGCTCAAGAAGCGCACACTCTAGACTCGGAACCCACACCCCAGTACACATCTCAACCGCAGCAACAGTTGAACAGCCTACAGGAGGAAATTCGTCAGTTGCGCGAAATGATAGCGACTACCGGAGTTAACGCTGTTCACGAGTCAAGAAGGAATCAAGATCATACAGCTAAATTTAATAGTAATCAGTCTGGTGAGTCTGGTAAGTCTGGCTCTTTACTTTGTCAATTGTGTGATAAGCGTGGTCACAATGCAAAATCTTGTTATACATTAAAGAATTGGTTTTATGGCGCGTGCCACAATTGCGGAAATGTAGGACATAAGGCCCAATACTGCAAAGCGCCCCGGTTTTCATTTCATGGGCAAAGAACCACATATCAGGGAAACGGGAACGGCTCGCCAATGCAGGGTATAACTGCTTATGCTTTAGTAGACTCAGGTGCTGATATATCTGTGGCTAATATTAATGTATTGCGCAAGTACGGCCTTGACAACATTTGCAAAGTGTTCGCGTCAGACAAACCAAACGTGACCATCGCTGATAATGATGTAATTGACATCCAAGGAGTAATTAATTTAAATGTTACAATTGCCAACACCAATATTTGTATGAAATTTTATTTGGTAGAAAATTTGAGTACAGATTTTATAATTGGTCTTGATTTTCTCATTTCACATAATGTATCTCTACACTTTGGGAATGGTGGCGGGCTTTTATCCATTGACCCTAGACGTGAACTTAAGAGTCAAGGAGTAATAACAATTCCACCGCATTGTGAGGTAATTAAATATGCTCACTTTCGAAGCAAATCTCTACCTCATGGCGTGGTGGGTATTGCGTCAGGGACCTTCGTTGCTGATGGTGTTATTTCAGCAAATGTTCTAGCTTATGTTGACAATCAGACTGTTCCTGTTCGTATTATGAATGTATCAGACAATTATATTTCACTACCAAAGGGCACGCCTTTAGGGTCATTTGTGTGTTTATCAGGGCATGATAAAATTATCTCTCTTAGCGCAGATAATCCAAATTTGGTGGATACCCGTACTGATAACCCACCTGCATCACTGCTTAACTTAGATGAAGACTTGTCACCTGACCAGCGAAATGTTATAGGTAATTTAGTTAATGATTTTCAAGACGTTTTCGCAAGTCCAGGTAATGCTTTGGGTGAATGTGGCATAATTGAACACAAAATTGAAGTAGACCCGAATCAACGCCCACATAGACAACGCACGTTTAGACTGAATAGTAAACAAAAGGTTGAACTAGAAAACTGTTTACATGTGTTACAGTCCCAAGGGGTCATAGAAGAATCTGTGAGCCCATGGGGTGCACCTTGTTTTCTGGTGGCTAAAAAGAATAATCAGGGTCATCGTTTCGTTGTTGACTATCGTAAACTTAATGCATGTACCCAACTAGATGCGCATCCTTTACCATCGACGCAAGAATCGCTCGAAAATATTGGGGTCGCTAACCCCGTTTATTTTAGTACCCTAGACCTGCAAAGTGGGTTCCATCAAGTAACTCTAGACCCTTCCTCGCGCCCCTATACCGCCTTTCGATCCCACATGGGTCTTTTTCAATTTCGACGTCTACCCATGGGACTTCGGAACAGTCCCGCAACTTTTCAGCGCGTAATGGAAGCAGTGCTTCGCGGTCTCACATGGAAAACATGCCTTATTTACCTAGATGATATTATTGTATTTAGTAAAACGTTTGACGATCATATACATCACTTAAAGGAAGTCTTTTCCAGACTCAGAGATGTTATTTCGCGAAAAGACAGATTCACTACCTAG

Transcript

Paelopatides15375

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF03732	Retrotrans_gag	Retrotransposon gag protein	Family	Interproscan
PF09668	Asp_protease	Aspartyl protease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR005162	Domain	Retrotransposon gag domain	Interproscan
IPR019103	Domain	Aspartic peptidase, DDI1-type	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR053134	Family	RNA-directed DNA polymerase homolog	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004190	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-