Gene detail

Detailed information of Paelopatides16112 in Paelopatides sp. Yap Gene info

Gene ID	Annotation	Contig	Start	End	Strand
Paelopatides16112	SPARC OSTEONECTIN	ctg3096	8427	35004	-

Gene Structure

More details in Jbrowse Sequence

CDS

Paelopatides16112

ATGACATGCGTCTCCTTCGTAGCTCAACAAGACATCTTGGTCAGAAAACTCCAAGCTGTACCTGTCAAAGTTTATGACTACTATGAACCACATTACGAAGCCATTCGTTTGTATAACGTTACCGGAGAAATTAGAAACGAAGAGCCCTGTGAAGGAGAAGATTGTAATGAAGTTGGAGATGGCAGTATACCTGAAGACTTACTCACTCCATATTTAACACCTCGTGAACCGCATCTATGTAACACAATAAATGGTAACTGTGTTTTCATGGCTGATAGTATCCAATGTACTTGTGAGCGTACCTGCAGCTATGGAGGACCTCATGTGTGCGGTAGCGATGGAATGATATACGATAATTATTGTCACATGGAAGTCGCTGCCTGTCAAAAGGATGAAATTATCAAGATTATACCAATGACAAACTGTAGAGGTCATCCGGAACCTACAGATGACATTCCATCCTTTGATGACCCAGAAGATGAAGTTGGAGCTTCATCCCAGAGCCTTAGAGATGATAACACAGATGGTTCCCCGATTTATCCAGAAGAGAGTGATTCTGATAACTCTGTCTCTTCAGCTTTCAGTCAGAGCCCCTTCATCCCTATCATACCATGGTTCTCTCATAACACAGTACCACCAGGTTTCTTCAACCCAAGGAGTTTAGAGTCGGCTACATCAAGACCAGAGACGGATAGTCCGTCGATCAGTTGGAATGAAAAAACTGTCAATGGTGATGTGTTGGAGATGGAGGAGATATATCAGGAATTACGACATGATAATTACATGTTAAATAATCTACCCAGCTCTTCTCCAAACCCTGAGATTTGGATGGAATCTGTTAGGCCATCTACACCAGAGATCAGAGAAAAGGAAGACACGAGCAAAGAGGAATCGGAAACTATGGAGGATGAGCTAGGCGAAGGGGAAAGGACCACGTCTTCAAATAGGAGGAAAAATATCACGGCAGCTGAGAACTCGCCGGGCGATTCGGAGGTAACACAGAAACAAGAAGACAGCAGGACAGTGTCAACTATGAAAAGAAACGATGAAAGAGATGTAACCACTGATTGGAGGAGATGGGAGGCAACAACAATGGTGGATGATACTGATGAAGCATCTACCATGAAGCACGACTATACCACCATGAAGGCCAAGAGCACCACCAGACTTGGTGATATGGTTCAGGATGAGGAGACTGGGGTTCCTTCCAGAGGTACAGACATAGTCAGGGGAATTACTGACAAAATTACAAAGAAATCATTTATAAATGAAGTTGTTAGTTCAACACAGGACCCTAGAAGAATTGAAGCAAATAGTTACACCACCTTGGCAGCTAATAATAACACCTCCTTGGCAGCTGATAATAACACCTCCTTAGCAGCAAATAGTGACACCTCCTTAGCTGCAAATAGTGACACCTCATTAGCAGCTAATAGTGACACCTCCTTAGCAGCAAATAGTTACACCTCCTTGGCAGCTAATAATAACACCTCCTTGGCAGCTAATAATAACACCTTAGCAGCAAATATCTCCTTATCAGCAAATAGTGACACCTCATTGGCAGCTAATAGTGACATCGCCTTAGCAGCTAATAGTGACACCTCCTTAGCAGCAAATAGTTACACCTCCTTGGCAGCTAATAATAACACCTCCTTGGCAGCTAATAATAACACCTTAGCAGCAAATATCTCCTTATCAGCAAATAGTGACACCTCATTGCCAGCTAATAGTGACATCGCCTTAGCAGCAAATAGTGACACCTCCTTGGCAACAAATAGTTACACCTCCTTGGCAGCTAATAATAACACCTTAGCAGCAAATATCTCCTTATCAGCAAATAGTGACACCTCATTGGCAGCTAATAGTGACACCGCCTTAGCAGCAAATAGTGACACCTCCTTAGCAGCAAATATTGACACCTCCTTGGCAGCTAATAGTTACACCTCCTCAGCAGAAAATAGGGAGAGCAAGGAGGAAGAAGAAGATAAGTTTTCACAAGAAAGTCACCAAAGAGGGAACAGGGACCACTCAATAATTCCGAAATGGCTATTTGATCACTCTGTCCCCCTCCCTGATGTACTCAGTGATGGCACTCTCTTACCATGGCACAACAGGATGCCACAAGATGATCCCTGA

Transcript

Paelopatides16112

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07648	Kazal_2	Kazal-type serine protease inhibitor domain	Domain	Interproscan
PF07677	A2M_recep	A-macroglobulin receptor binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002350	Domain	Kazal domain	Interproscan
IPR009048	Domain	Alpha-macroglobulin, receptor-binding	Interproscan
IPR036058	Homologous_superfamily	Kazal domain superfamily	Interproscan
IPR036595	Homologous_superfamily	Alpha-macroglobulin, receptor-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13866	SPARC OSTEONECTIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005518	Molecular Function	collagen binding	Interproscan
GO:0005576	Cellular Component	extracellular region	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0048856	Biological Process	anatomical structure development	Interproscan
GO:0050840	Molecular Function	extracellular matrix binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-