Gene detail

Detailed information of Paelopatides20396 in Paelopatides sp. Yap Gene info

Gene ID	Annotation	Contig	Start	End	Strand
Paelopatides20396	PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN	ctg4146	22691	96756	-

Gene Structure

More details in Jbrowse Sequence

CDS

Paelopatides20396

Transcript

Paelopatides20396

ATGGCGCTCCGCAGGCCGGTGGTCAGACTTCTGGCCCCCTCCTGGTCCATCAACTCAGTGCTGGAGGCGCTGGCGTGCCCTCCTTACGAGCAGATGGTGGAGGCTCCCTTACCAGACCTAACCAGAACTCTTTTTCTGGTTGCAGCAGCGTCCGTGAGGTGGAGAGGGTGTCTCCAAGCTTTGTCAGTCAAGCAGGGTCACCTTAGGTTCGAGCCCCACGGGGTCAGGTTGATTCCTGATCCGGAGTTCCTTCCTAAGAATCAGACCCTAGAGTTTGTTCCGGGGGATCTTTTCCTTCCAGACATCAAGAGCTTCTCTTTGGTGGCTGAGGACAAACTCTGTTGCCCAGTCAGGGCACTGAAGTGGTACCTTCATAGGGTCAAGCACCTGCGGTCCTCCGATAGGTTGTTCGTCCTTCCCAGATGCCCCTACTCGGCGGCTTCTAAGGATACCAATTCTCGTTGGCTGTCGGAGGTCATCTTGCCGCACGCGGACTCTAGAGTGAGGGCTCACGAGGTCCGAGGACGAGCGGCGTCTAGGGCTCTCTTCACAGGCGTTCCTATTCAGGATATCCTGAAAGCGTCGGCCTGGAAGACTCCTGCTACTACCTTCGTCGCCTGCTACCTCACAGACACGCTGGCGGCCGAAGCAGCTTTCGGTAGTTCAAAGAAGAAAGGGAAGAAGAAAGGAGTGACTCTAAACCTGAATGCATTCTTAGCAGATACCCCCGGAGTAACTGCTTCCCCCGGTTCCACCTATGTGTCTAACAAGGCTGGATCATGGGCAGATGAAGCTTCTAATGAAGATGTTGATGTAAGTACATCATACCGTGATACGGATGGCTCGTTACCGAGTAGGGTTCAGCTACCTACTGCTCCTCGGAGTGCACAACCAGTCAACCTTGATTCATCAAAACTTCCAGATAAACCACCATACACGGTCTACCTGGGAAATATTCCATTTGACATCAATGAGGAAGATATTGTCAAGTTTCTTAAACAGTGTAATGTCAGTAACGTTAGGTTTCCCAAGGATGGTGACGGACGCTTTAAAGGTTTCTGCTACGCTGAAGTAGACGATTTGGATTCACTTAAAACAGCACTATCACTTAACGATGAGCCTTTGAGAACTAGACGAATTAAAGTTGACTTAGCCACACAAGACAACCACTCTAGGGGAGACAGGGGAAATGATAAATATGATCGTACTCAAGATGATTGGAGAAAAGCCAGTGATGAACCCGACTGGGGCAGAGGTGGAAGAGGTGGCGGAAATTATGATAACCAAGATTTTGGACGAGGTAGGGATAGGTATGAAGATGGAGGAAGGCGGGATAATGAGTGGGATCGTAGGAGAGGTGGGCCAGACAGACGGGGATATGACGACAGACAGGGCGGAAGAGTTGAAGAGGTAGATAACTGGAGAAGTGCGCCACCGGATGTTCCAAAAGGTGACGGAAACTTTGACAGAAGAGGCGGGTATGATGACCGTGGCAGAGGTGGATATAATGATAGAAGGGGTGGAGGAGGGTATGACGATCGCGGAGGCGGAGGAGGGTTTGATGATCGCAGGGGTGGGGGAGGTTATGATGACAAGAGAGGGGGTTATGATTTTGGTGACAGGAGAGGTGGGGGGTATGAAAGGCGAGGAGGATATGAAGACGGAAACAGAAGAGGATATGATGATCGCAGAGGAGGTGGAGGGTTCGATGACAGACGAGGGGGTCAAGATGCTGGAGACAGAAGAGGCGGTTTTGAAGATAAAGGAGGATACAGTTCCAGAAGGGTCCCTTATGATGATGCGGAAAAAGAGAGAGGGTATGAGGACCGTGGCAGAAGAGACGGAAGTGCAGAGGGCGATAGAGAAGGTGGTAAGGAAAGAAAGAAATTAGTCCTCACAAAGCGATCACAACCGGCAGAAAAAAAATCGACAGAGTCCGGCGGTGCGTCATCTTCAATATTTGGCGGCGCCAAACCAGTGGATACGGCGGCAAAGGAGAAGGAGATCGAGGACAGGTTTAAGAGGCAGCGAGAGGTGGATGCCCTAGAGAGGAAAAGACTGGACAGTGAGAAGGATTACATCAGAAGAGATAGACCTGAACGTACACGGACTGAGAGTGAGACTAGCCACGAGGGAAGAACTAGGCACAGTAGCTCTGGCTCAGGCAGGAGTGGACCACGACCAGTGATGATACGCAGAGAAAGTGAGAGGTCCAATGAGGAGGATGCTGTGTTTCATAAAGAAGACCCCACCTCTCCAGTGCTTGCTACGTCCCCCACTGAACCTACATCACCCAAGTCACCGAACTCCTTCAAAGACGAGCCCCTAAAGGTAGTCATGCCGGCACCCCCTCCCAAAGAAAATGCCTGGGCGAAAAGGAAGGACAACGTAGTATCCCCAAGGTCAAGCTCTGGACCACGCTCATCCTCGTCCTCTGAAAGTGCAAAAGATCCGACGTCACCGAAAGAGCAACAGAGTGGATCTCCTGAAGACAGAGAAAAGAGGTCATCAGGAGATGAACGGGGAAGTAAACCTGCTCCTAAAAAACCAGTTGAGAAGTCGACACGTAAACCTTCTGATTTGCCCAAGTACGAAGAACCCAAACCAAAGGACTGGACGCAACGGAACATGTTTTCAGGTTTAGAAGAAGAGCAGAACTAGTAGTTGCCCTTTCATTATAATCTCTCCATTAGCTGTTTCTTTATTGCATGTGTTTTTTTTTGCAATGACAAATGTGTTAGGGTCAAACAACACATATGGGCTGGACACCCCTAATTTCATCCCCCATATACCCCAGTCTTTTTCTTCTTTTTTTCTCCCTTTATATATATTTTGCATCTGGTCTAAGTTGGAGTTATGTAGTTAAATTACATTACTTTTAAATAAAGATATTTAACTTTTTTAAAGTGGTGGTGCATAATAGCATTCCTATAGGTAACAGAACGATTCTTTGACCTACATGTGGAATTTCAAACATCTATCAAATTAACTCAACCCACACAACACTTAATTTGTTTCTTGCAATTCCTCATCTGGTGAGATTTTATTTGAATTCCCAGGAGATGTTTAATGGCAGACTCAAGATTAATGATGTCATAATAAGGAAATGTGATTAAGAAGAGGTTAATTGGATCTATCAATATGTAGATTTTAATATGTATAAATTCATCCAGGCTGGTTTCACCTTGTAGTATTATGAAAGAGAGAGAGAAAGAAGAAAAGTGTATTTTACACAAAATGTCTTGAAATGTTTTGATACTTAAATGAGGAGGTTGTGTTTTCAATGTAACTTCTCTTGCCATTACATAACACTTGAATATAAACTATATTATTTAGTTTTGTTACATTAATGTCACAACTGATGTTTAACATCTTGAGAATGTCTCTCATACTTCAAAACAAGTCTACTTTACATATATAAGATTCAGGGCTGGTCAATGTTTGCAATGTAACTTTCTGCTGTCGCAGATGCAGGAGCGAGCACAAAGTGATTCTTTGTTTTATTAGTCTCACATCATATTTACTACCTCAAAGCAATTGTCAGCACGTTAATATTAGATGTACCCAGGCCAACAAATCACTGGTAAAAAAGACTCGAGGCCAAGTAAAAAAAATTAAAATAAAACGTTCATGTTTAGCGTTTCCGCCTGCTTTCGTTTTTAAAAACCAACGTTTGTCTGGTCGACCAATCACAGTTTTTCCTTCCGATTCACCAATACTAATAGTGCATTTAGGCCAACCCAAAAAAACGAGGCGTCCAATTTGAATGGAACAAGAGGTGGCCAAATTAAAACGAATCCGTGGGCCATTTTAGAAAGAAAAAAAGGGGGCTCTAAAAAAAAAAAAAAAAGTTGGACGCTAAAGATGTTTTATTTTTTTTATTTGGCCTAATTATAAATTGCACCTTTTGGTGAGAAGTACCTGATGGCATTGTTACTCGAGTTGTGGATTGTTACTCCAGCATTGTGGATACAAATGAATTTAAGCTTGTCCCTGCTAGATCCTCCTCCCTCTTCTCATGTTTCTGTCGTGCTTTGTGCTAACTTATAATATGAGGGCATGTCCTCATCATACTTAGATGGGGGAGAGAGGGGAGCATGAGAAGTTTGATTGTAACCGATGATAAAATTTAAAACACCTGACAGGTAGTTTTTAATCACATTTTCGGAATTAGGTATTTCTTACCACAATTATTTAACCCCTCGCAAATAATTAGGCCAATAAAAACAATAACAAACTGTGTCAACAGATTTGTTTACAAACATTGCCTTTCAATTAAAAAAAAAATGTTACTGGACCCAGCAATCTCATGGATATTAACCACGTTACTGGACCCAGCAATCTCATGGATATTAACCACGTTACTGGACCCAGCAATCTCATGGATATTAACCACGTTACTGGACCCAGCAATCTCATGGATATTAACCACGTTACTGGACCCAGCAATCTCATGGATATTAACCACGTTACTGGACCCAGCAATCTCATGGATATTAACCACGTTACTGGACCCAGCAATCTCATGGATATTAACCACGTTACTGGACCCAGCAATCTCATGGATAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR011010	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR033107	Domain	Eukaryotic translation initiation factor 4B, RNA recognition motif	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR35617	PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-