| Gene ID | Annotation | Contig | Start | End | Strand |
|---|---|---|---|---|---|
| Paelopatides22007 | SPLICING FACTOR SF3A-RELATED | ctg4647 | 99630 | 156623 | + |
| CDS | |||||
| Paelopatides22007 | |||||
| Transcript |
| Paelopatides22007 |
| Protein |
| Paelopatides22007 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00078 | RVT_1 | Reverse transcriptase (RNA-dependent DNA polymerase) | Domain | Interproscan |
| PF11931 | SF3a60_Prp9_C | SF3a60/Prp9 C-terminal | Family | Interproscan |
| PF12108 | SF3a60_bindingd | Splicing factor SF3a60 binding domain | Domain | Interproscan |
| PF13297 | SDE2_2C | Replication stress response SDE2 C-terminal | Domain | Interproscan |
| PF16837 | SF3A3 | Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000477 | Domain | Reverse transcriptase domain | Interproscan |
| IPR000690 | Domain | Matrin/U1-C, C2H2-type zinc finger | Interproscan |
| IPR001878 | Domain | Zinc finger, CCHC-type | Interproscan |
| IPR021109 | Homologous_superfamily | Aspartic peptidase domain superfamily | Interproscan |
| IPR021966 | Domain | Splicing factor SF3a60 binding domain | Interproscan |
| IPR024598 | Domain | Splicing factor SF3a60 /Prp9 subunit, C-terminal | Interproscan |
| IPR025086 | Domain | SDE2-like, C-terminal domain | Interproscan |
| IPR031774 | Domain | SF3A3 domain | Interproscan |
| IPR036875 | Homologous_superfamily | Zinc finger, CCHC-type superfamily | Interproscan |
| IPR038269 | Homologous_superfamily | SCAN domain superfamily | Interproscan |
| IPR043128 | Homologous_superfamily | Reverse transcriptase/Diguanylate cyclase domain | Interproscan |
| IPR043502 | Homologous_superfamily | DNA/RNA polymerase superfamily | Interproscan |
| IPR051421 | Family | RNA Processing and DNA Damage Response Regulator | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12786 | SPLICING FACTOR SF3A-RELATED | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000398 | Biological Process | mRNA splicing, via spliceosome | Interproscan |
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0005681 | Cellular Component | spliceosomal complex | Interproscan |
| GO:0008270 | Molecular Function | zinc ion binding | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-Yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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