Gene detail

Detailed information of Paelopatides22683 in Paelopatides sp. Yap Gene info

Gene ID	Annotation	Contig	Start	End	Strand
Paelopatides22683	ZINC FINGER PROTEIN	ctg4870	29697	68667	+

Gene Structure

More details in Jbrowse Sequence

CDS

Paelopatides22683

ATGGACAAGTTATGTGAAGAAGACCCAAAGTTTGTTTACATTAAAGAAGAAGTTGTAGAAGATGACTTCAGAGGGAATGAAGTCAATGCAGAAGACCCAAAGTTTGTTTACATTAAAGAAGAAATTGTAGAAGATGACTTCAGAGGGAATGAAGTCACTGAGCCTGTGTCCAATGCAGAAGACCCAAAGTTTGTTTACATTAAAGAAGAAATTGTAGAAGATGACTTCAGAGGGAATGAAGTCACTGAGCCTGGGATTCACCCCACACAGGGATTAGTACAGGCTATTCAGGAAGCACCAACCCCAGAAAACAAGGATCAGGTTCGTTCCTTCCTTGGGTTGGCAGGATATTATGCCAAGTTTGTGAAAAACTTCTCAATGTTAGTACAACCAATTCGTGATACCATGCAATTAGCTGTATTTAAATGGTCGATGGTAGCAGCTAATGTATTTAAGGCAGTAATGAAAGAAATAATTAGTAACCCAGCTCTGGTGCTGTTTGACGCAGATAAGGAGGTCATTGTCACAACCGATGCGTCATCTTACGGCATAGGTTCAGTGCTCACCCAAATATCTGAAGGTCGAGAGGTTACTGTTTTGTTTGCCTCAAGGAAACTGACTTCTTGTGAGCAAAGTGGCACATTGAAGGACCATGAAAGAACACATACAGGAGAAAAGCCTTATCAATGTAGTTATTGTGACAAATCATTGAGTCGAAGTGAAAGATTGAAAGATCATGAAAGAACACATACAGGAGAAAAGCCTTATCAATGTATTCACTGTGACAAATCATTTATTCATAGTGACACATTGAAGAACCATGAAAAAACACATACAGGAGAGAAGCCTCATCAATGTAGTTACTGTGACAAATCATTTATTCGAAGGGGAGGATTAAAGTATCATGAAAGAACACATACAGGAGAGAAGCCTCATCAATGTAGTTACTGTGACAAATCATTTATTCGAAGGGGAGGATTAAAGTATCACGAAAGAACACATACAGGAGAGAAGCCTTATCAGTGTAGTTACTGTGACAAATCATTTATTAAAAGTGGCACATTGAAGGACCATGAAAGAACACATACAGGAGAGAAGCCTTATCAATGTAGTTACTGTGACAAATCATTTATTCAAAGTGGAGGATTAAAGTATCATGAAAGAGCACATACAGGAGATGAGCCTTATCAGTGTAGTTACTGTGACAAATCATTTACTACAAGTCAAAAACGGAATATACATGAAAGAACACATACAGGGGAAAAGCTGTATCAGTGTAGTTATTGTGACAAATCATTTAATGCAAGTGGATCACTGCAATATCATAACAAAACACATACAGGAGAAAAACCGTATCAGTGTAGTTACTGTGACAAATCATTTATTCAAAAGGCAGGATTGAAGTATCATAAAAGAACACATACAGGAGAAAAGCCCTATCAGTGTAGTTACTGTGACAAATCATTTACTACAAATCATGGACGGCAAAAACATGAAAGAACACATACAGGAGAAAAGCCTTATCAGTGTAGTTACTGTGACAAATCATTTATTTCAAGTGGAGGATTAAAGGATCATGAAAGAACACATACAGGAGAAAAGCCTTATCAGTGTAGTTACTGTGACAAATCATTTAAGTCATATGGCGGATGGAAACACCATCGAAGAACACATACAGGAGAAATGCCTTATCAATGTAGTTACTGTGACAAATCATTTATTGCAATTGGATCACTGAAAAATCATGAAAAAACACATACAGGAGAAAAGCCTTATCAATGTAGTGACTGTGACAAATCATTTATTCGTAGTGGCACATTGAAGGACCATGAAAGAACACATACAGGAGAGAAGCCTCATCAATGTAGTTACTGTGACAAATCGTTTATTCAAAGGGGAGGATTAAAGGATCATGAAAGAACACATACAGGAGAAAAGCCTTATCAGTGTAGTTACTGTGACAAAGCATTTACACGAAGTGGATCACTGAAGTATCATGAAAATACACATACAGGAGAGAAGCCTTATTCAAAGTGGAAGAGTGAAGGATCATGA

Transcript

Paelopatides22683

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	zf-C2H2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF17919	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR041577	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR050527	Family	Snail/Krueppel C2H2-type Zinc-finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24388	ZINC FINGER PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-