Gene detail

Detailed information of Paelopatides25155 in Paelopatides sp. Yap Gene info

Gene ID	Annotation	Contig	Start	End	Strand
Paelopatides25155	TFIIF-ALPHA	ctg5823	15664	83502	-

Gene Structure

More details in Jbrowse Sequence

CDS

Paelopatides25155

ATGCGCAACTATAAACTGCTCCCCCACAATCCCACCCCATCTTCAACACATCTTCAAAAAGTGATCGAAGATAATCAAGACAAACTCAATAAATCCCATAATGATTTGGAACAGTACTCCAGGAGGAATAGTATCCGAGTTTTTGGATTAAAGGAAGAAAAGGATGAAAAGGTATCTGAAGTATTTATTGATATGGTCAAAACAGAGCGTGGGGTTGAGCTGCAAAGAAGTTTTATTGATCGATGCCACCGAGTGGGCAAAACCGGGACAGCTCCAAAGACCGTCCGCCCAATCATAGTGAAGTTCGTTTCATACGAGCACCGCCAAGAAGTTATGAAAACCAGACGGAAGTTAAAAGGGAAGGGGATAGTTATCAAGGAGGATCTCACCAGAGAAAATTATACTGAGTACGATCACCAACATGATAACCATCTAGATATCGATCCAGATGCAAAATTCTTTTTTGATAAAGTGAATTTTAGATGTAACTATTATACTGATGAGATCTTTAAAAGCACTGACATTAAGAATTACGATGGTTTTTCTATCATTCATTTCAATTGTAGAAGCCTCAATGCAAATTTTTTAAACTTATCCAATTATCTGAATGAACTAAGTATGAACTTTGATATCATAGCAATTAGTGAGACATGGCTGAATTCCGATTCAAATTTATCTCTCTTTCAGATTCCAGGATACGATTTGTGTCACATTGATAGAAATGACAAAAGAGGTGGAGGTGTAGCATTGTATGTCAAAAACTGTTATAATTACAAAGTATCTGACCAAATGTCTTTTGCAATTCAGGATAATCTGGAGTGTATTACAATAGAAGTAATATTTGAGGCTAAGAAAAATATCATGGTTAGCTGCATTTACAATCAACCTGCTTCAGATACAAATACTTTGATTCAAACAATTGAAGAACTTTATAGAAACAACAGAAAAGATGTTTACTTATGTGGTGATTTCAATGTTAATCTTTTTGATTATCAGGGTCAGGAAGCTATTAGAGATTTTACAGACACGATTTTTAGCCTGGGTTTGTTTCCACTCATTGACAAACCCACTCGCATAACTGTTCAATCAGCAACTCTGATTGATAACATTTTTTCGAATGTTCTTAATGTAAGCCATGAATGTGGTTTACTCCTTGCAGACATTAGTGATCATCTGCCAGTTTTCTGTGTATCTAACTACAAATTACATTCAGAGCAAGATAATGAATTTATTTTTTACAGAAAAAAATGTGAGGGAAGCATGTCTATGTTTAAAGAAAAGTTAAACAATGAAAGTTGGAATAGTGTATATTTGACAAATAATGCTCATAGATCTTATGATATTTTCATAAGTATCATAAAACGGTACTATAACGATTGTTTCCCACTAAAGAAAGTTCTTGTTGGTAATGGTAGAAAAGACAAACCATGGGTTACAAAAGGCTTAAGAAATGCTTGTAAAAAGAAAAGAAATCTGTATGTCAAATTCCTTAAAAGGAGATCTTCTGAGTTTGAACAACGATACAAAATCTATAAAAATAAATTGAACTCCATCATGACTCGTTGCAAAAAAGATTATTACACGAATCTTTTACAAAGTCACAAAAACAATATTAAGGAAACTTGGAAGGTTCTGAATGGCATTTTGAATAAAAATGTTAATAAACAACTTAAATATCCAGATACTTTTGTTGACAAAGGTGATGAAGTTACAGGAGATGCTATTGTGAATGGCTTTAATAATTTTTTTATAAATATTGGACCAGAATTAGCAGCCAGTATTCCAGATGATAGGGGAAATATTCATGATTTTCTTCACGAGCCAAAAGCTAATTCTATGTTTTTAGAGCATGTTTCTGAAGTCGAAGTCCTGGAGGTTGTCTCAAATATGACCAACAAAACATCAACCGATTGCAATGACTTAAGTATGTCATTTGTTAAAGATATTATCATGCAAATCCTGCATCCATTCACATTCATCTGTAACAGTTCATTGTCTAGTGGCATTTTCCCTGATAGCATGAAAATTGCCAGGGTCATTCCAATATTCAAGGGTGGAGAGAAAAACTTCCTAAGATTAAAAAAGACAACAGAAGGATACTGTATAATGGCATCAACTTCTCATTCTCCTGGAGGTTCAAATATTATTGGTGAATTTGCTGTCAGAATACCAAAGAAATCAAACAAGAAGTACAACATTATGCAGTTCAACAGACAGAACAAAATTGACTTTAAACAGTGTGGTCAGGTGAAAATGGAGAGGGAAAATAATCTAAAGGAATTCAAGGCTACCATAGCAGATGAAATGCCTGTATATGGTGCAGGGAGTGAGTTCGGAAGGGAGAGAAGAGAAGAGGCTAGAAAGAAAAAGTATGGAGTCCGAACTCAGAAGTACAAGGAAGAGGACCAACCATGGATACTGAAACTTGGTGGAAAACAAGGCAAAAAGTTCAAAGGTAGAAAAGAAGGCTTGGTGGCTGAGAACTCCAGTTACTTCATATTCAAACAGCTGCCAGATTCATCATTTGAAGCACACGCTGTCGATTCATTCTACAATTTTACTCCCATGATCCAATATAGAACTCTGAATGCTGAAGAAGCAGAGGAAGAGTTTGGAAGGAGAGACAGGACTATGAACTTCTTTACTGTGATGCTGCAGAAAAAATTAAAAGATCCTACAGAGGAAGTAGACCAGGACGGCAAGCCAAAGAAACATTCTAAATCAAAAGGACTGACGATAACGGAAGATGATGATTTCCAGGATTTACTCCAATCTGACGATGAAGGAAGTGACGACGATGGTGATTCCAGCAAAAAAAAGACCAAGAAAAAAGTTAAAAAAGCAGGCAAAGCAAAGAAGAAAAAGAAAGTTGAGGAAGAAGCAGAGGAAGAGAGTGATGAAGGAGATTTTGATGCAAGAGAATTAGATTACATCTCAGAAGAGTCAAGTGAGGGAGAAGCAGAAATTGAGGAGAAAAACGACATCAAGGGCATCGATCAAGATTACAGAAGATTGAGGAAGATGAGGGAGGAGGAAGAAAGCAAACAAGAAGAGAAGAAGAAGTCGAAGCAAACAAAGAGGAAGGAGAGATTGGTAACAGCAAGAAAGGCGACGATAGTGACTCGAGTCGCTCTGATTCCAGTGACAGTGACATTGATGATAACAAGATTCAAAAAACCAGGCAAAAAATCAAGTAACAAGTCTTCATCTAGAAGCTCTACAGGTCCATCAAGCAGATCTAACACGCCGACACCAAACGACACTACCAAGACATTATCTGATGCCGCGGTGAAATTACAGAAAGATCCAGATTTGAGCAGTAAAGTGAAAAAAGTGGAGGCCCTTTCAAGGTCACAGGAGAAAGGTGATTCGAAGAAGATCAAGGCAGAAAATGGAGAAAACCAGGCATTAAAGCGACTAGGGTCGTCATCGTCCGGAGAACACCCCAGTGCCAAGAGGATGAGGACGGAAAGTCCTGTCCCCAGGACAGGAACTCCCCCAAGTGAGCAAGGTATCACAGAAGATATGGTCAGACGATACTTGATGAGAAAGCCCATGCAGACGAAAGATTTACTTTACAAGCTGAACCCGAAGAAAGTCGGACTCTCAAAGGACAAAGTGGTTCAGAGGTTGGCTGAAGTTTTAAAGAGGCTTAGTCCAGAACAGATTAAAATCAAAGACAAAACTTATTGGACTTAA

Transcript

Paelopatides25155

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03372	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan
PF05793	TFIIF_alpha	Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR008851	Family	Transcription initiation factor IIF, alpha subunit	Interproscan
IPR011039	Homologous_superfamily	Transcription Factor IIF, Rap30/Rap74, interaction	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13011	TFIIF-ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001096	Molecular Function	TFIIF-class transcription factor complex binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005674	Cellular Component	transcription factor TFIIF complex	Interproscan
GO:0006367	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0016251	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan
GO:0032968	Biological Process	positive regulation of transcription elongation by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-