Gene detail

Detailed information of Paelopatides28944 in Paelopatides sp. Yap Gene info

Gene ID	Annotation	Contig	Start	End	Strand
Paelopatides28944	SERINE/THREONINE-PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B'' SUBUNIT GAMMA	ctg787	38142	68992	+

Gene Structure

More details in Jbrowse Sequence

CDS

Paelopatides28944

ATGGGACGGACTGGACGCCTATGCGTTCCCCCCGTTCAACATGATCCACAGGGTGCTACTCAAGCTCCGATCGTCTTCGGCCCACCTCCTGATCGCGCCACTATGGCCGCGCCAGCCATGGTTCGCGACCCTACTGCACCTGGTGGTGGCCGTCCCGAGAGTCCTTCCGGCCAGGCCGGACCTCGTTTCTCAGCACAAGGGCCAGGTCCTCCACCCCAGGCCGCAGGACCTGCATCTTACTGCGTGGCGACTGTCCGGCGTGCTTTCCGAGCACACGGACTTCCTGCGGACGTTGCGTCCTTGGCAGCCGACTCTAGACGACCTTCCACCTTCCGGACTTATAATTCTAGACTGTCTAGATTCAGCCGTTGGTGCTCAGAGAATGCTACTACTCCCACTAGTGCGTCTCTAGTCCAGGTCTCTTCTTTCCTTAAGGTTCTGTTTGACGAGGGCAAGCACGTCAACACCATCAGGAATTATCGGTCAGCCATCAGCGCAGTCCATCTGGGCTTCGCCGACGGTTCCACGCCAGGCACGAACAGCGTCCTTTCGCACCTAGTAAGAGGCATGGCACTCCGCAGGCCAGTGGTCAGACTTCTGACCCCCTCCTGGTCCATCAACGCTGTACTGGAGGCGCTCGCGCGCCCTCCTTACGAGCCTTTAGCGGAGGCCGCCTTGCCGAACCTGACCAAGAAAACCATTTTCTTGGTCGCAGCGGCGTCCGCGCGGCGGCGCGGTTGTCTCCAAGCTTTGTCAGTCAAGCAGGGTCACATTAGGTTCGAGCCTCACGGGGTCAGGTTGATCCCTGCTCCGGAGTTCCTCCCCAAGTATCAAACCCTGGAGTTTGTCCCGGGAGATCTTTTTCTCCCAGACATCAAGAGTTTTTCTTCGGTGGCCGAGGACAAACTCTGTTGCCCTGTCAGGGCACTGAAATGGTACCTTCACAAGGTCAAACATCTTCGGTCTTCCGATAGGCTGTTCGTCCTCCCCCGAAGCCCCTATTCATCGGCTTCTAAGGATACCATTTCTCGCTGGCTTTCGGAGATTATCACGCCGCACGCGGACTCTAGAGTAAGGGCTCACGAGGTCCGAGGTCAAGCGGCGTCCAGGGCCCTCTTCGCAGGCGTGCCTATTCAGGACATCCTGAAAGCAGCTGCCTGGAAGACCCCTGCGACCTTCGTCGCCTGCTACCTTACGGACACGCTGGCGGCCGAAGCGGCTTTCGGCCGAGCTGGACATGGTAAGTATAGAACTCGCGAAAGGAGAAGCAGGGAGTTGCTAGACAATGAAGAACTTCAGAATCTCTGGTATCTGTTAGACAAGCATCACACACCCCCTATGGTGGGTGAAGATCAAATGATCAACTATGAAGATTTCTTGAAAGTGGCAGCAGCTTCAGGGCCAAAATGCAAGCCATTTTTTTCAGCAACAGTGTTCTCCAAGCTCCTACAAAATGACCCTTATGGGAGGATATCCATCATGCATTTCTTCAACTATGTAATGAGGAAAGTTTGGCTTCACCAAACCAGGATAGGTCTCAGTCTTTATGATGTTGATGGAAAGGGATATCTTAAGGAATCAGATCTTGAAAATTACATTCTTGAGCTGATCCCCACCCTGCCTCAGCTGGATGGTCTGGAGAAATCATTTTATTCCTTCTATGTCTGCACTGCCGTTAGAAAATTCTTCTTCTTTCTGGATCCAATGAGAACAGGTAAAATTAAGATTCAAGATATCCTAGCTTGCAGCTTTCTAGATGACCTCCTAGAACTGCGAGATGAAGAACTTCCCAAAGATGCACAAGAGTCCAATTGGTTCTCTGCCCCCTCAGCCTTGAGGGTTTATGGTCAATATCTTAATCTCGACAAGGACCACAATGGCATGCTCAGCAAGGAAGAATTATCAAAATACGGCACAAACACACTTACAGACGTATTTCTTGATCGAGTCTTTCAGGAATGTCTTACATATGATGGTGAAATGGATTATAAGACCTACCTTGACTTTGTTCTTGCCATGGAAAACAGGAAAGAACCCCAATCTCTCCAGTATTTCTTCCGTCTGTTGGATGTCCAGAAAAGAGGCTACCTCAACGTCTTTGCTCTCAACTTCTTTTTCAGAGCCATCCAAGTTCAGATGCAACAACATGGACAAGAAGCAGTATCATTTGCTGATGTTAAGGATGAGATATTTGATATGGTCAGACCATCTGACCCTCTACATATCACCTTACAAGACTTGATCCAAAGTAGCCATGGAGAGACAGTGGTCAGTATCCTGATTGACTTAAATGGATTCTGGACATATGAAAACAGAGAAGTGTTCATGGCAGAAAATAACAGCTCAGAAGCTGTTCAAGATGACCACAGTGAATTCTGA

Transcript

Paelopatides28944

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02899	Phage_int_SAM_1	Phage integrase, N-terminal SAM-like domain	Domain	Interproscan
PF17958	EF-hand_13	EF-hand domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004107	Domain	Integrase, SAM-like, N-terminal	Interproscan
IPR010998	Homologous_superfamily	Integrase/recombinase, N-terminal	Interproscan
IPR011010	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR013762	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR039865	Family	Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma	Interproscan
IPR041534	Domain	PP2A regulatory subunit B'', EF-hand domain	Interproscan
IPR044068	Domain	Core-binding (CB) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12085	SERINE/THREONINE-PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B'' SUBUNIT GAMMA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000226	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0001782	Biological Process	B cell homeostasis	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005813	Cellular Component	centrosome	Interproscan
GO:0005819	Cellular Component	spindle	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0030865	Biological Process	cortical cytoskeleton organization	Interproscan
GO:0035303	Biological Process	regulation of dephosphorylation	Interproscan
GO:0043029	Biological Process	T cell homeostasis	Interproscan
GO:0045579	Biological Process	positive regulation of B cell differentiation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-