Gene detail

Detailed information of Paelopatides33529 in Paelopatides sp. Yap Gene info

Gene ID	Annotation	Contig	Start	End	Strand
Paelopatides33529	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	utg11087	49847	126635	-

Gene Structure

More details in Jbrowse Sequence

CDS

Paelopatides33529

ATGACGGCGCAGGGGCGTGTCGTTATTTTAGGAGATTTCAATTTCCACGTGGAGAACGGTGCGAATCGTGATGCACAGAAATTCATGGAGCTAGTTGATTCACTTGGACTAGAGCAAATGGTGAAGGGCCCGACTCACATTAAAGGTCACACATTGGACCTTGTATTGACCCGGCGCTCGGATGATTGTGTTCTTGAGTGTACAGTTGATGCGTCATTACCATCGGATCACAGTTTGATCAATGTTGTGACTGACCTGACTCGTCCAAAGTGTATGAAGGTTGAGCGTGTGATCAGACGAATATCGGCGATTCGGACTGATCAGCTGATCGACTGCGTCAAGGAGCTATCGTTGAAAAAGCCCCCCGCCGCTGGTTGTTCTGCGGATGAACTTGCCTTGCGCTTCCACCAGAAGATGGAGCGGACTATGGATATACTCGCGCCCGCTGTGACAAAAATCGTAACAGATAAGCCCCATGCCCCGTGGTACACAGATGAGTTACGTGAGCAGAAACGTGACGTCAGGAAGCTGGAGAGACGGATGATCGCTGACCCTATAGAAGTGAATAGGCAGATCTATCGAGCAGCTAGTCATGAGTACAGCCGGAACGTGGACCAAGTGCGCATCGATTACCAGAGGGGACGTATCCAGGAGGCAGACATGCGACAGATGTTCTCACTGATCGACGAGATTATCGGTGAGAAGCGGGCTTCAGGAGCTACTTTACCTCAGCGCGATGATCCAAAGCAGTTAGCACAATCGTTTTTAGACTTTTTTATTGGAAAAATTACCAAACTACGGGAATCATTGACGGACACGATTTTACCAGAGCGACCTTCTTCCACCCTTCAAGGCAACCTTTCGGATTTTACACCAGCAACCGAGCAGACTCTGACAGAACTCATTCTTTCTATGAACAACAAATCATGCGCATTAGATCCTGTACCAACTAAATTATTGAAATCGTGCCTCCCTGTCATTATCAATGATCTTGTTGAAATTGTGAATAAGTCGTATGAAACAGGGACGGTACCTAGTATATACAAGCGTGCCCGTGTTAGGCCTCTTCTGAAAAAACCGGGCCTAGATCCGGATGTTCTTTCACATTATCGACCCGTGTCAAACTTGTGTTTTGAACATAAATTCCTCGAGCGTTTTACTTTCAAGCAGTTAGATATTTATTTTTCTCAGTTCGAATTATATAGTAAACTCCAATCCGCGTACAGAATGAACCACAGCACTGAAACTGCTTTACTTCGCGTACGTGATGATGTTCTTCGTGCATTGGATACTCATATGCAAGTCTTATTAGTATTATTAGATCTGACCGCGGCCTTTGACACGATTGATCATCAGATATTATTGCATCGTTTAGAATCTCGTTTTGGCATCCGCGGCTCTGCCTTATCCTGGTTCAAATCTTACCTTACCAATCGTACGCAACAAGTTTGCATTGGTGATCATTGTTCTTCAGAGTCTGATGTATTTTGTGGAATTCCTCAGGGGAGCGTACTCGGACCTTTTTTATTTACGTTGTACTTGTCTCCAGTTGAAGAAATTATCAGTAGCCATGATCTTGACTCGATGTTATTCGCTGATGACACGCAATTATACATAACTTGTGAAAGCGCAGTAGATAGTGCCATCCAAGTCGAGTGCTGTATAGATGAGATTCGTGTCTGGATAAAGGATAACAGACTGGTGCTCAACGATAGTAAGACCGAGGATGAGAGGAAACAGATTTTGAAGACCAATCTATGGTTGACATTCAACTGGGAAGATGAATTTCTTCGATGGGATCCTGATGAATTTGGAGGGATAAAAAGTTTCAAGATCACGTCAGACGTAATTTGGACTCCAGATATCACTCTTTATAACAGTGCTGCTGATACCTACAGGTCATACATGGACGGCAAGGTCGTAGTGGTGGACCACACTGGAGCAATTAACTGGGCCTCTCCAGCTATTTTTCTCTCCCATTGTCGGATATCTGTCACACACTTTCCATTCGATCATCAGGAATGTGAGATGAAGTTCGGACCTTGGCAGCACGATGGTACTGAAATCATTTTACACGGCAAAGCACACTGGAAGCTCAAATCGACTGGTATTGGGATACAGGAAGATCTGACTTCCAGAAACCTAGCACTCGTAAACCAAACTGCAGATCATCCATGTGTTTCTTCTTTTGGTCTCTGGATGGACGTATATGTGGTCTTGTTAAAGGGTCAGACGGAAAGAGGTTAA

Transcript

Paelopatides33529

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF02931	Neur_chan_LBD	Neurotransmitter-gated ion-channel ligand binding domain	Family	Interproscan
PF14529	Exo_endo_phos_2	Endonuclease-reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR002394	Family	Nicotinic acetylcholine receptor	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR006201	Family	Neurotransmitter-gated ion-channel	Interproscan
IPR006202	Domain	Neurotransmitter-gated ion-channel ligand-binding domain	Interproscan
IPR018000	Conserved_site	Neurotransmitter-gated ion-channel, conserved site	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR036734	Homologous_superfamily	Neurotransmitter-gated ion-channel ligand-binding domain superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46670	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0004888	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0005216	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0005230	Molecular Function	extracellular ligand-gated monoatomic ion channel activity	Interproscan
GO:0006811	Biological Process	monoatomic ion transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0022848	Molecular Function	acetylcholine-gated monoatomic cation-selective channel activity	Interproscan
GO:0034220	Biological Process	monoatomic ion transmembrane transport	Interproscan
GO:0045211	Cellular Component	postsynaptic membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-