Gene detail

Detailed information of Paelopatides34316 in Paelopatides sp. Yap Gene info

Gene ID	Annotation	Contig	Start	End	Strand
Paelopatides34316	PROTEIN CBG26694	utg116006	554020	669778	-

Gene Structure

More details in Jbrowse Sequence

CDS

Paelopatides34316

ATGCGAGTAGAAATGATGATTGGTATGGCTGAGAGAAACTCAGAAAGGGAAAAAAGAAAGAAGTATGTGAGGGAATCCAAAGGAGGAAGCTCTGGGGAGAGTGTTGATAATTATATTTCCGCTTTACGGGAACTGTCTACTACGTGCAATTTTGGCACTTTCTTGGATGAAATGATAAGGGATCAGTTGGTTGAAAAGACTAATTCATCACGCATAAGGGAACGTTTACTCTTTGAAACTGATGTCAAGTTATCCAAGGCAATTGACATTTCAAGACAAGTAGAACAAGCCGTTAGGGATTCTCGTTCATTGTCAGGGAAAAGGTCAGATGACACCGCATACGCTAGTGTGAGAATGACTATTCAAAAAAATACATCTCGCAACTTCAGGAGATCTGGACCGTCCGAAAATACACGTAGGCCTAGGTCCATAAAGCCAAATAATGTATCCAACGAAAATAGAGGGCGCCAATCATGTTTTAGATGTGGCTCAAGCCAGCATATTGCGAAATCACCACAGTGCAGGGCGAAGAACGTTACGTGTGACGCTTGTGGAAAAGTAGGACATTACGCAAGAGTTTGTTTTCAACACAACGCAGTGAGACAGGTGGATTCATCGGCAAATACACAGTCGACGAGAAACGCGACGACAAGTTACGAAGGAGTACAAGTCTTAGGAGTTTCTTCAGTACAGAATCCAGTAACACCGGTGGCAAGACCCAGTATCATGTGCGATGTAGAGATCAACAAGGTCAAATTAAGGATGCTTGTTGACACAGGTTCTGATATTTCGATAATGAACTTAAGATTATACGATAAATATTTTGTAAGAGAGGCATTAGTACAAGGGAATGCAAGAATTACATCATATAATAATACTATGATCGATACAAAGGGATGCTTTTCTGCTACAGTGGGATATAAAGGGAATTATATGCATACACAAATATATGTTGTGGAAACAGGAATATCTCTCATAGGCAAGGATGTTATACACAGTCTAGGGTTACAAATAGATGGATTTTCATTATCATGCCTACAGTTAGGTGTGGAGGCCAGTGGCAGTAAGCCAGCAAGTAATTTGAGAAGCACTAGGCAGACTACATATAAGCCTAAGGTTTATAGGCCTAGAGTTAATGGTATTGATGGCAATACACAAATCTACAAACATGATTCCAGTGCTGTGACTGGTCAGTTTGAAGATTTATTTTCTGAGGGAGTTGGGTTAATACGTGGTTATACTCACAAAATTAAGCTCAGGCCAGGTTTCAAGCCTGTACAACAGCAACTGCGCCGTATACCATTTGCGGTCCGTGATAAAGTTGCAGCCGAGCTTCAACGACTTCAAGATGAAGGGATTATTGAACCCGTTGCTGAGGCAACCGAATGGGTTTCCCCGGTAGTCGTAGTATGGAAAAAGGATGGGGGGATCCGAATATGCGTTGATTTGCGCAAAGTAAACGAAGCAGTGGTAATCGAGAAGTACCCATTACCTAATATCGATGAGCTCCTGTCCGAACTCAGAGATTCAAAGTATTTCTCCAAATTAGATCTCAAGTCGGCTTACTATCAATTAACTTTGGAAGAAAGCTCACGAGACCTAACCACGTTTGTAACAAATCAAGGACTCTATCGTTACAAAAGAGTGTGTTTTGGTTTGGCTTCGGCCCCAACATGTTTTCAAAGAGTTATGAGCTCAGTGTTGAAGGGATTACAGGGAGTTCAGTGTTTCATAGATGATATAATTGTTTATGGGAAATCCAGGGAAGAACATGATTCAAATTTACATGCAGTGCTCACAAAACTAAGATCGGTGGGGATGAAGTTGAACTCAAAGTGCGAATTCAACGTAGATTCAATTGAAATATTGGGACATGTGGTGGACCCAAATGGATTGTCACCAAACCCTGACTTAGTGAGAGCAATTAAAGAGGCACCCACCCCACAGAATAAAGAGCAGGTTAAATCCTTTCTGGGGCTTGTGGGTTACTATTCAAAATTTGTCCATAATTTTGCTACACAGGTCCAGCAAATTAGAAATACACTGGTAGAATCAGATGTGTTTGATTGGACAAAGGAGGCTGAAATCTCTTTCCAGGCAATTAAACAGGAAATTATCAGTAGTAAGGCACTTGCATTGTTTGACCCTGATAAAGATACTATTGTTACAACAGACGCCTCGGGATACGGTCTCGGAGCAATGATGACCCAAATGAGAAGGGGTCAAGAGGTCACAGTATGTTTTGCATCCCGCAAGCTTACAGCACAAGAACAGAAATACTCTGTCGGTGAGCGAGAAGCTCTCGCTTGTGTCTGGGCAGTGGAGAAGTGGCATACATATTTGTGGGGTAGACAATTTGTCTTGCGGACTGACCATAGAGCCCTTACAACATTGTTGGCAACTAGTGGCACAGGCCATAGGCCAATGAGAATTGCCAGGTGGTCAGCTAGATTATGTCATTACAATTATACAATAGAGTATAAACCAGGTACAGAGAACAAGGTGGCAGATGCCCTATCTAGGTTACCTGTAGAAGAGGATTCTACATTAAGAGTTAATGAGAATGATGATGATATAGCCGCAGTGTGCCAAATGATATTAGAAAAGAGTAGTATTACATGTGCTCAATTACAGCAGGAAATTATTAAAGATGAGGCATGCCAAGCAATGAAAGAGTATATGAAGGTGGGATGGCCTCAGAGTAAAGCACAAGTGTGTGAAGCTGTTAGGCCATATTACATAGTTCACACTGAATTATCAGTACATGATAATATCATATTTCGAGGGGATAAAGTGGTTGTACCTTCGGTGCTAACAAGCATACTAGTTAGTATGGCCCATGAAGGACACCAAGGTATGGTGAAAACCAAACAAAGATTAAGAAAATTGTATTGGTGGCCAGGCATGGACACCCAAGTGACTACAATGGTGAAACACTGTACGACATGTAACTTAGCTGATAAGTCTGTGAACACAAGAGTAGCACCAATGCAACCGGTGCCATTACCAGAGTGTAGTTGGGATAAATTAGGATTAGATATAGTTGGTCCCGATGATTCGGCACCACAGGGGTGTAGGTACGCCATAACACTCATTGACTACAAGTCCAAGTGGCCAGAGGTCGCTTTTACAGACAATGTGACTACAGGTGCTGTAATAGACTTTTTACTGTCAATATTTAGCAGGGAAGGGTTCCCAAAAGAAATGGTTACAGACCATGGAGTCCAGTTTACCTCGTTCGAATTTGAAGAATTCTTACGTAGTAGGAACATTGTGCATAGAATGTCTGCGATCTATCACCCACAAGGGAATAGTGAGGTAGAACGCTTCAATAGAGTTCTTAAGGAGTGTCTCCAGTCTGCGAGCTTGGAGAAAATAAACCGGAAGGCATCAGTTCGTGAATTTCTGTGCATCTACAGAAGTACACCGCATTGTACTACGGGGGAATCCCCAAAGTTGGCACTGCATAGTCGCCATCTTCGTACCAAATTGGATATAGTGGGAGCGACCCCTGTACCCAAACAAGTTGATCCATCCGTCATTAGGGAGCGCGTAGTGAGTGCTCAGAGGAAAAATAAGCAGTATTTTGATAAACGGCATAGAGTGCAGAGTAGAACATTTCAGGTGCATGACTGGGTGCGTATCCGCAAACCAGGGCATGTCCATAAGGGGAAAAGTAAATATTCTACACCTTTTCAGATAACTAAGAAGGTTGGCCCAAGCACTTACATTCTTTCTGATGGTAAGACTTGGAATGTGGAAAGATTGGTTCCTTTCAAGGGAAATGGAGGCCAATATCAAGTAGAAAATGAAAGGTGGCCGTTACCAGATTCTGACCACAGAGAAAGGCTTAACATGCCTAGAGAAGCGGTCGGAGGAAGACCAATTAGGAACCGTAGACCACCCGTTTGGGTTCAAAAAGTGCGATCAATTTTGAGAAGTACTGAAAAAATAGACGGTCTCTATCCAAATTATTTGCATCCTAAAACCGGCAAATGGGGACAGAAACATGTATCCTTGGGAGCATTGGGTGATAGCTTCTATGAATACTTACTCAAGTCTTTCATCTTGACTGGAGGGAGCGATACTCAGGCACTAGTCATGTACACTGAGGCAATAGAGGCCATGGAGAGAAAGATGAAACAGACGTCCAACAGTGGTTTAGTATTTTTTGGTGATTTCAGAGGTGCCAAGGTGGAGAAAAAGATGGACCATCTATCGTGCTTCTCTGGTGGAATGTTCGCCCTTGGTAGTAAATTTTTAGACAATCCAGAACACCAACTAGAATTAGGAGCCCAAATTACAAAGACCTGCCATAAATCATATGAAAATTCAGCTACCAAATTAGGTCCAGAGGCATTCCGCTTTGAGGGACACGGAGAAGCAGTCGCCATGAGACAAAACGAAAAGTACTACATACTACGTCCAGAAACAATAGAATCTTATTTTGTACTGTGGAGATTAACCAAAGATCAGAAATACAGAGATTGGGGTTGGGAAGCAGTAGAGGCCATTGAAAAACATTGTCGAGTTGATTCAGGATTTTCAGGGCTAAAGGACGTTTATGCTTCCAGAGTCGTCCACGATGATGTCCAGCAGAGTTTTTTCTTAGCGGAGACCTTAAAGTACTTGTACCTTTTGTATTCGGACGAAGACTTTGTATCGCTGGACGAGTGGGTCTTTAACACCGAAGCTCATCCTCTTCCCATCAAGAAGAATGCACGATAG

Transcript

Paelopatides34316

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan
PF01532	Glyco_hydro_47	Glycosyl hydrolase family 47	Repeat	Interproscan
PF17917	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR001382	Family	Glycoside hydrolase family 47	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR001969	Active_site	Aspartic peptidase, active site	Interproscan
IPR001995	Domain	Peptidase A2A, retrovirus, catalytic	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR012341	Homologous_superfamily	Six-hairpin glycosidase-like superfamily	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR036026	Homologous_superfamily	Seven-hairpin glycosidases	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR041373	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004190	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0004571	Molecular Function	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-