Gene detail

Detailed information of Paelopatides34926 in Paelopatides sp. Yap Gene info

Gene ID	Annotation	Contig	Start	End	Strand
Paelopatides34926	LYMPHOID-SPECIFIC HELICASE	utg12010	22453	103501	+

Gene Structure

More details in Jbrowse Sequence

CDS

Paelopatides34926

ATGAACTTCACGAATTGTCTTATTTTGACCATTATTTCACTATGTGCAGTATACCGTTGTCATGAAGTGTCCATTGAAGAGAAAATTGTCAGTTTAGTAGGAGATATGAGCATATTACGGTGCCATATTCAGGGTACACAAGGACTGGTAATTATCTGGCAGAAAAACGACGTAGAAATTGGACGCGCCAGTGCATCGAAGAGACAAGAGACAACAGACAACAGGTACGTCTTTGCTATTAATGCAGACGACTCTGTTGCTACGATGTCATTGACAAACACGACCTTTGATGATGCTGGTCGTTATATATGTATGTACTATTACGACAGAGGTACGATGAACGAAATTCAGTTCCAGCTAATTGTAAAAGATGAGCCAAGTATTCAGTTCAATGTTTTGGGAGAAACACAAACATCGAACAATTCTATACTAATTAATGAATATAGTACACTGACGATTGAGTGCGTGACTAACGGAAATCCAACACCAAATGTTAGTTTAGAAGTGGAATATTGCCAAGGATCAACGGATATTCCTATATTATTTGACGAAATTGTCGGGTTAGTAGCCCGGAAGGTCTTCCAGTTGAAGAATGTTAACAGAAACTTATCAGGCCGGTATGGGTGCGTATCACAAAATGACATCGGAAATATCATACTCGAAAGAGACATAATCATTACTTATCCCGCTACTGTAGTGTTGAATACGTCAACAGCTATAATAATACGTCAGCACGATGATTTATGTATAAGATGCAGTGTAGATTCTAGTACACCAGCTATAGTAAGGCTACAGAAACTCATACACGACGAATGGACGTCATTATCAGCAAATTCATCGCAGATCATAAAACTCGGACATATGACAGAGTGGCAGTTTTATTACAGTGATGTGACCAAAGAGGTTAGTGGGAGCTATAGATGTTGGGCATTTAACTCGAGAGGACATCCTTCTACATCTCATCATGTCACCGTTTCTGTGATTCAAGAGTCAAACTTTTTTTATCTTTGGATTATTTTGCCAGTTTTAATCTTCCTTTTTCTCGTCGGGGGAACAACAACTATTTTGTTTTACAGAAACTACGCGGAAGAGACTCTAATCAATCATGTAGTAGTGAGTCAGTGGGGTCAGATGATAACCAGGACTACTGCACTGAAAGCAAAGAAATTGAAACCAGACAGTCCTGGCAGAGCTCCACCTCCTGAAGGAAATACGACACATGGAGAAAATAAGGTATTGTATGAAAATGGTGTGAATGGAATTCTAGCAGATGAGATGGGTCTTGGTAAAACCATCCAGGTCATTGCACTCTTTTCACATATCATAGAGATGGGTGTGCCTGGTCCATTTCTAGTCTGTGCTCCCCTATCTACCCTTCCAAACTGGATGTCGGAATTCAGCCGTTTCTCACCAGACATTCCAACGATTCTGTATCACGGTCAAATCAGTGAAAGAGCCGAGCTGAGGAGGGAGATCAAGAAACATCTGGGAAAATACAAGGTACAACCGGTGGTGATTACGTCCTACGAGATTGTGATGAGGGATCGAAAATTCCTGGAACATTACCTCTGGAAATACGTTGTAGTAGACGAAGGACACAGGATAAAAAACCTGAACTGTAGACTTATTCGAGAGCTTAAAATGTACAAGACTGCTAATAGACTACTTTTGACTGGTACACCTCTTCAGAACAATTTATCTGAGCTTTGGTCTATGCTCAATTTTCTCCTGCCAGAAGTCTTTGATGACCTTAGGACGTTTGAATCTTGGTTTAACTTCACATCTCTTTCAAAGGAAGGAGGGGACGAGGAAATCGTAAAGGAGGAAAGAGAGAAACATGTACTCTCGATGCTACATCAGATTTTGTCTCCATTTCTGCTGAGGAGGTTGAAGACTGATGTTGAACTGTCAATCCCTAAGAAGAAGGAGATAATAGTTCATGCTCCTCTCACTGCCCTGCAAGAGGAGTATTATAGGAACACTGTCAACAAAACTATCTTAGACAAACTTAAACAGAAAGAAGAAGGAAATGTTGAAGAGATTCCTCTTGAGTTGACATCAGCAGGGAAACCAAGGAGGCGGACCAGGGCTAATATGAACTATAGCAAGTTTCTTGATGATACAGTCGAGGACTCTGAAGAAGATGTTCTTGCCTGGGCCAAGACCTTTACTTGTGATGGTCTTAAAAGGAATTCAAACAGATTTAGTAGAGGCCGAGGTGTCAAGCGTTTCCTGAAGACCCTTCCACCTGTGGAAATGACACCGTCCACTTCCAGAGTCGAGGATATTTCTGAAGCCACATTATTCAAAGGCAGGGTCCTGGAAGCCAGCAAAGTCTTGGCCTGGAAAGCACTCTCTTATCTGGAGGAATACACATGCTGGCAGCAAAACTCTTACATGATGGCCCGAGAAACCCCAGCACCACCTCACGAATCGTCTGTAGGCTATGTACCAGTACTTCCTGCAATATAG

Transcript

Paelopatides34926

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00047	ig	Immunoglobulin domain	Domain	Interproscan
PF00176	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000330	Domain	SNF2, N-terminal	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013151	Domain	Immunoglobulin	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR038718	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47161	LYMPHOID-SPECIFIC HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005721	Cellular Component	pericentric heterochromatin	Interproscan
GO:0006306	Biological Process	obsolete DNA methylation	Interproscan
GO:0006346	Biological Process	DNA methylation-dependent constitutive heterochromatin formation	Interproscan
GO:0010216	Biological Process	obsolete negative regulation of gene expression via chromosomal DNA cytosine methylation	Interproscan
GO:0031508	Biological Process	pericentric heterochromatin formation	Interproscan
GO:0046651	Biological Process	lymphocyte proliferation	Interproscan
GO:0140658	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-