Gene detail

Detailed information of Paelopatides41628 in Paelopatides sp. Yap Gene info

Gene ID	Annotation	Contig	Start	End	Strand
Paelopatides41628	TRANSCRIPTIONAL REPRESSOR PROTEIN YY	utg194079	136864	143693	+

Gene Structure

More details in Jbrowse Sequence

CDS

Paelopatides41628

ATGAGTGGTTTGTTTTCACAGGTATTACGTAGCTTAGGAATTCGGCAGACTGCATCATCCGCATATCATCCCGAATCCCAAGGTGCACTAGAGCGTTACCACCAAACACTGAAGACTATGCTCAAAACATTTTGCCATGATAGTCAGTCAGATTGGGACAAAGGCGTTGATTTCCTATTGTTTGCAACAAGGGAAACTCCAAACGAGTCCACAGGATTCAGCCCATTTGAACTAATATATGGTCATGAAGTTAGAGGACCTCTGAAATTAATAAAGGAAAGTTGTTTGTCGGAGCCCTCTACTGAGGTGAATGTTCTAGATTATGTGTCAGGTTTAAATGAAAGACTGCATAAAGCATGTAGTTTGGCAAAGGAAAATTTGAAAAAAAGTCAAACTCGAATGAAGAAGAGATTTGACAAGAATGCAAAAGAGAGAAATTTTCAGATTGGTGAGATGGTTCTAGTACTGCTTCCGATACATGGTGAGCCACTGAGAGCTCGGTTTTCTGGGCCTTATCGAATAGCAAAGAAAATCAGCAATGTAAATTACATTGTTGAAACTCCAGGACGGCGGAAAAGTACCCGTCTATGTCATGTTAACATGCTGAACCCATACCATCATAGAAATGAAAAGGTTTGTGCGGTGTCAGTAGTACAACATACTGCTGTAAAAAAAATAGAAAAGGTGGAAATTGATTTGAAAACTACAAATAAGAATTCTGGGGTTCTTAACCAACTTGATAATAAATTGAGTCACTTACAGCTAAGGGAGAGGGAAGAAATGAAAGACTTAATCTTTTTGTTTCCTTGTGTTTTTAAAGATAACCCAGGAAGAACAAATGTACTGTACCATGATGTTGATGTAGGGGATGCAAAGCCAATCAAACAACATCCATATAGGCTAAACCCTTGCAAACTGCAAGCGGTTCAGAAAGAAATACAGTATATGCTCGAAAATGACATAATTTCGCCTGGCTATAGCCCGTGGGCGTCGCCTATCATATTGGTGCCCAAAGAGGATGGTTCACAACGTCTATGTATTGATTATAGAAAAGTGAATATGGTAACCATTACTGATTCTTACCCAATACCACGTCTAGATGATTGTATCGATCGTATTGGAAATTCAAAGTTTGTGAGTAAATATGACTTGTTGAAAGGTTATTGGCAAGTGCCATTAACAGAAAGAGCTAAGCAGATTTCAACTTTTGTAACACCTGATGGTGTTTGGTCATGTAATGTAATGCCTTTTGGAATGAAAAATGCACCAAGGTGTATTGTTCCTTTGTCTGCCCGTGGATACCAACAAGAACAAGAATGTACAGAACCAGTGGAGAGCTACACATGTCATCTATCAGTTAGTTTGGAGGATGGAGAAACATCTTCTGAGGATACAAAACTACCAGGAATAACAGAACAGTTTGATTGTGACATAGGTCATACTCTTCATGAAGGAATGAATACAGAAGAAGTACATTATCAATGTAGTCATTGTAACAAAATGTTTTCACATTCTCCATATTTAAAAGTACATGAAAGTACACATACAGTGGAAAATCCTTATCAATGTAGCTACTGTAGTGAAATGTTTTCAAAATCTGGAACTTTAAAAAAATATGAAAGACTACATACTGGAGAGAAGCCTTATCAATGTAGCTACTGTGACAAATTGTTTTCTGTTCTTCACTTATGTAAATCACATGAAAGAACACATACAGGAGAGAAGCGTTTTAAATGTAGTTACTGCGACAAATCATTTGTTCAACGTGGATCTTTGAAGAATCATGAAAGAACACATACAGGAGAGAAGCCTTATCAATGTAGTTACTGTAACAAATCATTTACTCAAAGTGGAGAATTGAAGCTACATGAAAGAAGACATACAGGAGAGAAGCCTTATCAATGTAGTTACTGTGACAAATCATTTGCTCAAAGTGGAGAATTGAAGCAACATGAGAGAACACATACAGGAGAGAAGCCTTATCAATGTAGTTACTGTGACAAATCATTTACTCAAAGTGGAGAATTAAAGCAACATGAAAGAACACATCCAGGAGAGAAGCCTTATCAATGTAGTTACTGTGACAAATCATTTACTCAAAGTGAAGAATTAAAGCAACATGAAAGAAGACATACAGGAGAGAAGCCTTATCAATGTAGTTACTGTGACAAATCATTTACTCAAAGTGGAGAATTAAAGCAACATGAAAGAACACATACAGGAGAGAAGCCTTATCAATGTAGTTACTGTGACAAATCATTTACTCAAAGTGAAGAATTAAAGCAACATGAAAGAAGACATACAGGAGAGAAGCCTTATCAATGTAGTTACTGTGACAAATCATTTTCGCAAAATGGAGAATTGAAGCAACATGAGAGAACACATACAGGGGAGAAGCCTTATCAATGTAGTTACTGTGACAGATCATTTACTCGAAATGAGCAATTGAAGCTACATGAAAGAACACATACAGGAGAGAAGCCTTATCAATGTAGTTACTGTGACAAATCATTTGCTCAACGTGGATCTTTGAAGGAACATGAAAGAACACATACAGGAGAGAAGCCTTATCAATGTAGTTACTGTAACAGATCATTTACTCGAAATGAGCAATTGAAGCAACATGAAAGGACACATACAGGAGAGAAGCCTTATCAATGTAGTTACTGTGACAAATCGTTTAATCGAGGTGGAAATTTGAAGCACCATGAAAGAACACATAGAGGAGAGAAGCCTTTAAATGTAGTTACTGTGACAAATCATTTGTTCAAAGTGGAGAATTGA

Transcript

Paelopatides41628

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	zf-C2H2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR003604	Domain	Matrin/U1-C-like, C2H2-type zinc finger	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14003	TRANSCRIPTIONAL REPRESSOR PROTEIN YY	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000790	Cellular Component	chromatin	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005667	Cellular Component	transcription regulator complex	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0031519	Cellular Component	PcG protein complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-