| Gene ID | Annotation | Contig | Start | End | Strand |
|---|---|---|---|---|---|
| Paelopatides42219 | SMAD | utg20282 | 441889 | 461095 | + |
| CDS | |||||
| Paelopatides42219 | |||||
| Transcript |
| Paelopatides42219 |
| Protein |
| Paelopatides42219 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | E3|E3 activity RING|PHD |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00078 | RVT_1 | Reverse transcriptase (RNA-dependent DNA polymerase) | Domain | Interproscan |
| PF00628 | PHD | PHD-finger | Domain | Interproscan |
| PF03166 | MH2 | MH2 domain | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000477 | Domain | Reverse transcriptase domain | Interproscan |
| IPR001132 | Domain | SMAD domain, Dwarfin-type | Interproscan |
| IPR001965 | Domain | Zinc finger, PHD-type | Interproscan |
| IPR008984 | Homologous_superfamily | SMAD/FHA domain superfamily | Interproscan |
| IPR011011 | Homologous_superfamily | Zinc finger, FYVE/PHD-type | Interproscan |
| IPR013083 | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR013790 | Family | Dwarfin | Interproscan |
| IPR017855 | Homologous_superfamily | SMAD-like domain superfamily | Interproscan |
| IPR019786 | Conserved_site | Zinc finger, PHD-type, conserved site | Interproscan |
| IPR019787 | Domain | Zinc finger, PHD-finger | Interproscan |
| IPR043502 | Homologous_superfamily | DNA/RNA polymerase superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13703 | SMAD | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000978 | Molecular Function | RNA polymerase II cis-regulatory region sequence-specific DNA binding | Interproscan |
| GO:0000981 | Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | Interproscan |
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0006355 | Biological Process | regulation of DNA-templated transcription | Interproscan |
| GO:0006357 | Biological Process | regulation of transcription by RNA polymerase II | Interproscan |
| GO:0007179 | Biological Process | transforming growth factor beta receptor signaling pathway | Interproscan |
| GO:0009653 | Biological Process | anatomical structure morphogenesis | Interproscan |
| GO:0030154 | Biological Process | cell differentiation | Interproscan |
| GO:0032924 | Biological Process | activin receptor signaling pathway | Interproscan |
| GO:0045944 | Biological Process | positive regulation of transcription by RNA polymerase II | Interproscan |
| GO:0060395 | Biological Process | SMAD protein signal transduction | Interproscan |
| GO:0070411 | Molecular Function | I-SMAD binding | Interproscan |
| GO:0071144 | Cellular Component | heteromeric SMAD protein complex | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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