Gene detail

Detailed information of SKAU_T00024400 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00024400	ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4	CM056376.1	90750156	90764292	+

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00024400

ATGAACAAAGAGCCAGAAAGTGAAATTCATGTACATATTAAAGAGGAGGAAGCAAATGTCAGTGATGAAGCAGTTCAAGATGATGAAAATGTATCCTTTGACAACTCGAAAAATACTTTGTCATCGGCCCCATTTGCAGATGGCACAGAAGTCTCATCCAAAGAAGTGCTTCCAATTACGCCAAAGTTGGAGAAGCATCCCAAATATGACACCTTCATGGACTCGTCCCAAGAATCTATCAACAACTATCACAAAGATGGTGTAGAAGGAGCAGCTGAGCACATCCTTGCAAATCCGAAAAACTCGAACTCTCGGAGGAGTCTTAATGAGGACACTGATATAAAAGAGGACTCAAATGATGAACTATATCAGCCAGGACAAGAGTCTTCTCTTGACATGTCGGTGACCGTCGGAGTAATGCGTGATGGAGACCTGCCTCGCACCTCCTCGCCTGATGACCTTCCTGAAGTCCCAAAGCTAAACAAAGATATGACTTCCGTTTTCCAACAAAACAAGAAAATCATGAAGCGGCCCTCTACTCTAGTAGAGAATGTGGGTCTCAACCGGTTACTGGAATACCTGCAACCACAATATTCACTCCCCTCATCTTCCTACTTTACCAGCACTGCCATACCAGAAATGTACAAGAGAGTGAAAGAAGTTGTCATCACACACCTTAAAGAGGCTGAGAGTGGCATCATCCATTTCACTGCAAGTATCTGGGTCAGCAGCCAGACACGGGAGTACTTGACCCTGACAGCACACTGGGTCACTTATGAGTCGTGCGCGCGACCTCAAGGCCAAGACTTTCACTCATCCGCCCTCCTCAGCATCTCTCCAATTGACTGTGACTACAACATGCTCCATATTCAGAAGCAGCTGGAATACCTCTGGGACATTTGGATTCATTCTTCAGGGCTGAAAATAGGGTTCACTGTAACTGATAATCAGAGCATTGGAAACATGTTGGAGGATAATGATCACACCACTGTACAGTGTTTTGAACGATCCATTGACCTCATTGTAACTGAAGCCATAAAAAGTCAGAGGATGGTTCAGAACCTGTTGAGCATTGCTCGTAAAATCTGTGAGCGTGTTCATCGCTCAACGGAAGCAAAAGAGAAATTGACCGAGCTCCAAAAGGAATATCACTTGCCAGAAAACCACCTGGTTCAGGACATTCCCTCCAAGTGGAAAACATCCTTTTACATGCTTGAACGTTTAGTGGAACAAAAAAAAGCCATTGATGAGATGTCAATTGAGTGCAATTTCAGGGAATTGATCAGCTGTGACCAGTGGGAAGTGATGCAGTCTGTGTGCAATGCTTTAAAACCTTTCGAGGTTGCCTGCAGGGAGATGAGCAATCAGACCGCGACATTAGGCCAAGTAATACCGCTCATCCATATTCTCAACCGAAAAATAGACATGCTCTTTGATGAGACTATGGGCATTGACAACATGCTCAAGTCTCTAAAGGAAGCTATGGTGAGCCGAATGTCCTCAACACTTCATAACCCAAGACAGATCACAGACAACTTCAACAAGGGTTTCGACAGAACAGCAAAGCAGAACTTTGGAGGTGGAAACACTGCATGGGAGGAGAGGAAACTGTCAAAATATGAGACCAGTGAGATTCGCCTGGTGGAGATTTTGGAAGGCCTGTGTGACAGCAGCAGCTTTGAGTGCAATCACATGGTAGAGGAACACGAGGACCAGTTTGAAACCTGGTGGTTCAAGAGGAAAACAAAGCACCCTGACCTTTTTAAATGGTTCTGCATCGATACCATCAAAGTGTGCTGTCCCAAAGGAACGTTTGGCCCTGACTGCAATGCCTGTGTAGGGGGTTCTGAGAGACCCTGCCATGGCAATGGGGCATGCGACGGAGATGGAACCAGGGCAGGCCACGGCAGGTGTAGCTGTAGTCATGGATACCAGGGGGAGTTCTGTTTGGACTGCATCGATGGGTACTTTATTGAGGAGAGGAACGTCACCTTTTCTCTCTGTGCAGAATGCCACGCCTCCTGCAAGACTTGTACAGGATCGACCAATCAGGATTGTGACAACTGTAAACCTGGATGGGAGAAGGATCAGGAGGGGGCATGTAATGATGTAGACGAGTGCTCAAAGGAATCACCTCCTTGCAAAGAAGACCAGTATTGTCTCAATACAGATGGTTCATATTCCTGCCAAGCCTGTGACAAGGTCTGTTCTGGCTGCAATGGGGCAGGGCCTAGCGACTGCCTCGCCTGCGCAGATGGATACAGGGAGGACGAGGGCACCTGTACAGATATCAACGAGTGTGAGCAGCCCGATCAGGCATGCCCTGGAGAGCACCGTGAGTGTGTCAACATCAAGGGCAGTCACAGGTGCATCTGCTCCAGCAACTTTGAGGAGAAAGATGGAGTCTGTGTCCAAACAGAAGAGCCAGCATCAGAGGAAAGCCAAGAGGTGCCGGACTCCAAACCAGCAGAGGGCACAGTGCCGAAGTACCCAGAGGAGCACGAGGACCTATGA

Transcript

SKAU_T00024400

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07645	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742	Domain	EGF-like domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR002049	Domain	Laminin-type EGF domain	Interproscan
IPR006212	Repeat	Furin-like repeat	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR049883	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR052035	Family	Zinc finger BED domain-containing	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46481	ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-