Gene detail

Detailed information of SKAU_T00034810 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00034810	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN	CM056376.1	125989432	126000480	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00034810

GGAGAGAGCAGCTACAACCACctgtaggctacactgcaagTTGGCTGGCTATTGTTAGGCATTGTATTGACTTAGTTTGTTACGTTATATCAGCTGACAAACTAAATGGCTATTTAGTACACCACTTCGTACCAAACAATCAGTACGTTAGCAGTCAGCCGGTGTTTGACAGCATATTATAATAAGTTACAGTCGGTAATTTAAGGAAAGTGGCTAACGCTATTTCCTGAGTGGAAAATCCGTGTACTGTCAACGTTTGGCGGGAACTCCAATTAGCCAGCAAGCTATTAACGATGACTAACTTTATTTGGGGGACGTTAGGACATATCATAAATTACTGACTTAGAAGACAGTTTAAGCACATATGGACGACGACAGTGTAAATTCGGTGCATGGAAGCGGCCGGATGGACAGACCGAAGGAGGCAGCGCTACTGGCCCTAATGGAGAAGTCAGGCTACAGTATGGTACAAGAGAACGGCCAAAGGAAATTCGGAGGGCCGCCTCCAGGTTGGGAGGGGCCCCCGCCGCCGCGCGGCTGCGAGGTTTTCGTGGGGAAGATCCCCCGCGACATGTACGAGGACGAGCTGGTGCCCGTGTTTGAGAGGGCGGGCCGGATCTACGAGTTCCGGCTCATGATGGAGTTCAGCGGGGAGAACCGGGGCTACGCCTTCGTCATGTACACCACCAAGGAGGCGGCGCAGCGGGCCATCCACCTGCTGGACAACTTTGAGATCCGCCCGGGCAAGCCCATCGGCGTCTGCGTCAGCCTGGACAACTGCCGCCTCTTCATCGGCTCGGTCCCCAAGGAGAAGAGGAAGGAGGAGATCCTGGAGGAGATGACGAAGGTGACGGAGGGCGTGGTAGATGTCATCGTCTACCCCAGCGCCACCGACAAGAGCAAGAACCGCGGCTTCGCCTTCGTGGAGTACGAGTCACACAAAGCAGCGGCCATGGCTAGGCGGAAACTCATCCCAGGCACTTTCCAGCTCTGGGGCCACGCCATCCAGGTGGACTGGGCGGAGCCGGAGAAGGACGTGGACGAGGAGACCATGCAGCGGGTGCGGGTCCTGTACGTGCGGAACCTCATGATCTCCACCACGGAGGACACCATCCGCCGCGAGTTCAGCAAGTTCAAGCCCGGCGCCGTGGAGCGTGTCAAAAAGCTGACGGACTACGCCTTCGTGCACTTCTACCGGCGCGGCGACGCCGTGGACGCCCTGCGCGTCATGAACGGCAAGGTGATCGACGGCTCGGCCATCGAGGTGACCCTGGCCAAGCCCGTCAGCAAAGACGCGGCCCGGCGCTTCGGCCAGAGGGGCCACGGCAGGGGGCCGTACGGGGAGGGCGTCCTCTTCCAGGGCAAGGAGGAGGCCGGCGACGGGCCCTCGGCCAGGGCCCTCGGCCTGCCCGGACGGCTCGGCGGCCCCTACCTGCCGGACATGGAGCGCTGCATGTACCCCTTCTTCCCCGGCTCCAGCCTCATGCCCATCAGCATGCAGTCTCTGAAGCCCAGCCAGTTCTGCTCGGCCGTCACCCACCTGGAGTACTACTGCAACAAGAACAACTGGTCCCCGCCCGAGTACTACCTGTACTCCACCAGCGGGCAGGACGGCAAGCTCCTGCTCATCTACAAGGTGGTCATCCCCAGCACCCGCAGCAGCTTCATGCCCGACAAAGTGTGCACCATCCTGGAGGACGCCAAAGAGGTGGCTGCACAAAACACACTCTGGAGTTTAGACTGCACGTTCCACGGGCCAGGGTCCCCCGGCGGTCTGTCGCCCCCGGCAACCTCCGGCACCGGCCTGCTCTCCTACGGGTGCCGCACCTGCCCATACCCAGGGTACCCGCTCTCCCCTCCGCTGCCGCTGGCCAGCGGCAACGGTCAGAGGGTCTACATCTCCAACCAGGGCCCCTTCATTTAGCCAGCCCGAAGGCAGCCACACGAGGAGGaAATGCCATTTGGATGGAGAATATTCCTGGTTGAATAATAGCAACACATTCTGTGAACCCATAACAAAACAGTCTCTGCTACTATTACCTAAAATATTGTTGATGATTCTGCAACAGAAATATCCCAGAGTTGAAGTTCAGGTTTGGGGCCTGGAGGACTCCATATTTTAGACTTGTCTCATTCAAAACAAATGGGACAAAAGTTCCTTTGTGGGATTCTAATGTATGCATGTACAATGCCTTATTATGGACTACACAAGACTACATAACATGATCTTTCACCTCTCACAATCTTAGATAAATATTCACATTGTAGCTACTTCTGTGCTAATAGGTTCATAGCCTATGAACACATATTGAGCATCCATATTAGCAATCTATCTAGACAAATGGGCTCAgtcataataaattaatattgttTTGTAGGATATAGCACTTGATAAGGCATTGTGAGTGACTGCATATTTTGACCCAGAAATTCATTGAAGTTTTGGATAATGTTCACAAGATATTGTGATCTTTTTACAGAAAAGAATTGTTATAAATAACCATATGTTTTAAGCTTTTTCTCTAAATATGTCCTGCTGTATTTAGAGTAGTTGTTTAGAAGTGGTGCTCATGTGGCAGTGCAGTTGTTAGATATTTTGAAACATTGTCATTTCATCTATTCATGTGTACATTTTGTTCTCTATTCTAACATTCAGGTCTAGCTTCACAGTTGACTGATAGGATGTTATTTTGAAGGAGCTAAGCTGATTGTTGATTAAAGCCAGAACTGGAAATCTGTTTTCTTATCTCATGCACCCTTTTCGTAGGTAAATATTAATAGCTAACTCAAGATATAATATGTCACTGGATGGTATAAATAAACAGCACCGATTTAAAGCGCAAGGCTTTTTGTGAATACACAACATGGCTGTGATCCATGTGAAGATGAGCACATTTGTCATCTCTTTAATGGGTAGTCAGGCGCGTGCTGTGTTACCTGTTAGTGCTTAGCTTTTGGGCTGGCTTTATCAGTGTAGCTTGCTCCATCCCATCCAAATATTTAGAAAAACGCAGGTCCTCAAATGTTTCATTCCGACATACAGCCATAGGGAAGAGAAAGTAAAGTATCTGAACGCTAATGAATCACGAGTCATCTCCCTCTAGCATGATTTCAGTATGGTGTTTAATAATTACAGCTACCAAGTCACAAAGCGAGTCACTGCACTCCACTAATTAGTGGAGGTGATCGTCATTGTgacttcaaaaataaataaataaatacatcactcTTGGATTTCCAGCCTGGCTTTAACCATTAATCCAAATTCTTTGTACGATAAGCAACTTTTGCCTGTCTGTGAAACTATCTATTATCCTCCTATTAATTAAAGCAATAAGACTGTTGTAGTTTTCGCACTCTTTTGGCTACGGTTAAATATATTAGTTAAATATATTGGTTGAATTGGCACCAACCATCTACAACAAATGGTGAGGCCACATTTGTTGATGGTGTTTGTTCTGTCGAAGGACATCAGCTTTTTTAACAAAGTAGCTTAGAGCGTACAGTCTGGTCTATTATAAATCACAAGTTGATTTAGTgcattgaagtttttttttttcctggaaatTTGTGTTTCTGTCAGTCTCGTTTCTACATGGAAGTGTAGTCCTGACTTTGTGATCAGCTTGTGTCCTGTGTGAGTTAGACCATTAAAATGGAGCATATTTTTCCTTATGTACAGTTGTGTAATTTAGTACTCTTTCAGTAGTGGG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF14709	DND1_DSRM	double strand RNA binding domain from DEAD END PROTEIN 1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR006535	Family	HnRNP R/Q splicing factor	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR034435	Domain	Probable RNA-binding protein 46, RNA recognition motif 2	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR044462	Domain	RBM46, double-stranded RNA binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21245	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-