Gene detail

Detailed information of Sda_chr07g00161.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_chr07g00161.1	TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 61F	Sda_Chr7	16284373	16315301	+

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_chr07g00161.1

ATGGCGAACTCTGGCAACTACAAAACTCCCCCGGGATTTTCTGAATCAAAACCGTACACAAGGTGGGTTGATGAGTTGAAAATATGGCAAACTGTGACTGAGTTGGCAATAGAAAAACAAGCGCCAGCTATTGCACTTTCTCTGTCTGAATCCGGTGGAATTCGTGACAAAGTATTTAGCGAACTTGGTGTGGAAGATTTAAGTGGAAAGGAAGGTGTTGACAAGTTATTGAAGTTTATGGATGGCATCTATAAAAAGGATGATCTTTCTGCTGCTTATGAAGTCTACACAGATTTTGATAGATATAATAAGCGTCAAGAAGACATGGAGCATTTCATCATGGAATTTGAAAAACTTTACAATAAAACAAAGAAATTTAAAATGACATTGCCTCAATCCGTATTGGCATTTAAATTACTAGATGGATCTGGTTTACAACACAAAGACCGGCAGTTAGTGTTAACAGGGGTGAATTACAAAGAACCAGATACATTATTTAGCCAAATGTGTGTTGCACTTAAAAAATTCTTTGGAAGACAATCAATGACGCATCATGATTATGGTAGTGGTTCATCGCAAACAATAACTCAGCATCCCAATGTTAAAGTGGAACCACAGGAAACGTATGTGTCGTACAATCGAGGTGGACCGATGTATGGTGACAGGAACCGATATCAGACTCGGAGACCTTTCGGCAGAGGAAGGAATGATAGATTTCAGAGAAATCAAAGTGAAAGAACACCTAAAAGGACTACAAATCCCATATCAAGGGACGGAACTCCAATGAAATGCAAGATATGTGAGTCTATATTTCACTTCGCCAGATTTTGTCCAGATTCTTATGAAAATATGAATAGTCGTACAAGTGTCTACTACACAAATGATTACAATGATGATGCACAAGCAGTTCTATTCACTGGGAATAAAAAAGAAAACATGGAAGTTTTAGTTAATGAATCTTTCAATTCCGCTGTATTGGACAGTGCTTGTAGCTCTACCGTAGCTGGTGTTCTTTGGATGGAAAGCTACCTCGAAACTTTGAACGATTTTGATCGTAATCGAGTGAAAAGGAAGCCCAGTGACACAATTTTCCGCTTCGGTGGAGGGACCAAACTCGCTTCAAAAGAGAAGGTGACATTTCCTTGTGAATTAGCTGGAGTTGATTGTTTGATTACTACAGATGTGGTTGCCAGCGACATTCCGCTTCTCCTTGGTAAACCTTCAATGAAAAGAGCAAAGATTGTGTTAGATCTAGAAAATGATAGAGCGACCATATTCGGTAAGACTGTCGATCTTCAGTGTACATCCTCCGGTCATTACTGCATTCCGCTGGTGAAATCGCATGTTGACATTCGAGACACATGTATTTATGAAACGACTGCTTGTGGTAATGAAAAGACGACCAAGGAAAAATTTGTGATTGTGAACAAGCTCCATAAGCAATTTGCTCACCCAACGTCAGACAGGTTAAAAACACTTCTCAAAGATGCTGGAGTAAATGACAATGAATATTTAAAGGCAGTGGATGACATAACTTCAAAATGTGATGTTTGTATCAGGCACAAGAAAACTCCGTGTAGACCTGTTGTTTGTATGCCATTGGCAAAAGAATTCAACGAGGTTGTGGCATTAGATTTGAAGATTTGGAAACCAAACATTTATTTTTTACATTTGATTGATATGGCGACCCGATTTTCACTCGCTTCTGTGATTAACAGTAAACAACCAGAAATTATCATTGATCAAATTATGAAAATGTGGATAGGTGGAGGATTTGGCGCACCAAAGAAATTTCTTGCTGATAATGGTGGTGAGCTATCCAATTCCAAGTTTAGAGACATGGCACAGAATCTAAATGTAGAAGTTATGAATACATCTGCACGAAGTCCGTGGCAAAATGGTTTATGTGAACGGAATCATGCCATAGTAGATGATAATGTCACGAAAATTCTTGCTGATGATCCCAAAATGGATTTGGAGACCGCTTTGTTGTGGGCTGTTAATGCCAAAAACTCATTGCAGATGGTATATGGATACAGTCCCTACCAATTAGTATTTGGATGTAATCCTAATCTTCCGTCAATACTTCATGATAAACCACCTGCACTTGAAGGTACCGCCAAGAGTGAACTTTTTGCGAAGCATATTAGTGCTCTTCATGCTTCTAGACAAGCCTTCACTAAATCGGAATCGTCTGAGAAAATCAGACGTGCTTTACGGCATCAAATTCGACCGTCGGGAGAAATTTTCAACTGTGGTGATAAAATATATTTCAAAACTGATAAATGTAACGAATGGCTGGGGCCAGGAAAAGTATTTGGACAAGATGGGAAGATAGTGTTCGTGCGGCATGGGAGCTTATACATTCGTGTACCTACATGCAGAATTGTAAAGGTAGGAAGAGAATTCTGTTCTGAGAAATCTGATGAAATGGACATCGTCACACAGGATGTGCCTAAATTGACACATCAGGATGGAGTTCAAGTTGATACAAATATTAGCTGTTCTTCTGATGAAGAGGAATGTCAAGCAGATGAGCAAAATATATCAAGTGACAACAACCAGGATACAGACAGGATAAATGATGATAAAGTTCCTAAAGTTAAGAACAATATTTCATATAAACTTGCTGATGCATCAGATTGGATCAAAGGACTTGTCGTTAGTAGAGGTGGCAAAGTATCCGGAAAATATAAGAACTGGTTCAATGTGCAGAATGATGGTGATTCTGGGGTTACGGCCATTGATTTTGAAAATGATGTTCAAGAATGGAAATACGATGTGGACTATGACTCTGATGATCATGCTCAATGTGAAAATGTTAACATTATAAGTGACAAAGATGTACACAATGATGAACTAAAAGAGGCAAAGAGGAAGGAAATCGACAACTGGAATAGATTCAATGTTTTTGAAGAAGTAGAGGATAATGGTCAGCAATTCATTTCAACAAGATGGGTATTAACTGACAAAACAAAAGATGGAAAGAAAGTGATTAAAGCTAGGTTAGTGGCACGCGGTTTCGAAGATGATGACAAACATCGTACTGATTCTCCGACAATAGGTAAGGAGACATTGAAGATATTTCTTGCCGTATCGTCTACATTTGGATGGATGTGTAACGTCATTGACATTAAAGCTGCGTTTCTTCAGGGCAACAAGTTATGTAGAGAAGTGTATCTTAAACCACCTGACGGTTATTCAAATACTGGAAAGCTGTGGAAATTAAATAAATGCGTTTACGGTCTAAATGATGCGTCCCGTAATTGGTATTTACGTGTATGTGGAGTAATGGACAAAATGAACTGTAAGCAATCTAGAAATGACCCAAGCCTTTTCTACAAGTTCCATGATGGTAAACTTCAAGGCATGTTTCTCATCCACGTCGATGATTTCATATGGACAGGTGAAGAGAGCTTTGCTGTAAATGTAATTTTGCCAATTAAAGACATATTTCAATTTGGCAAACAGGAAAGTCACAAATTCAAATACATTGGACTGGATATTAATCACGACAATGATGCAATCATGTTGAATCAAATTCAGTACATTGAGTCAATTTCAGCCATTACTATTAGTGAAAGTCGTTTGGCAAAGAAATCTGATCCGTTAAATGATCATGAGATATTCTTGTTGAGGAGCTCAATTGGACAAATCAACTGGATTGTAAATCTATCGAGGCCAGATGCCGCTTTTGATGCTCTTGATCTTAGTACTTCCATCAAAGATCCGACTGTGGAACATATTCAGCGGGCTAACAAATTGATTAAGAAGTTAAAACTTGATCAACTGAACATTAAATTTCCAAAATTGAGCAGCATTGATGATCTTCGACTGCAGCTTTACTGTGATGCATCATTCGCCAATCTTTCTGATGGGTATTCTAGTGCTGAAGGATATATTGTGTTATTGTCAGACAAAATTGGATCCAGTTGTCCACTAAGCTGGAGATCAAATAAAATTCGGAGAATCGTGAAAAGCACCTTAGCCGCTGAAACATTAGCTATGGTTGACGGGTTGGATACCGCATTCTATCTTGGTTGTATTCTCAGTGAAATTCTCTATGATATGACCGGACAAAATGTAATTCCCATTGATGTGTATACTGACAATAGATCATTATTGGAAAATATTCAATCAACAAAGATGACATCAGAAAAGAGGTTGAGGATTGACGTGTCCAGTATCAAACAGATGATAGAGAACAATGAAATATCAAAAGTTCAGTGGGTTGAAAGTAGCCATCAATTAGCAGATGCTTTAACAAAGAGAGGAGCTTCACCTAGAGATCTGTTCGTGACTCTTGGAGATGGAAAGATTCATTCACATGTTAAATGTTATCAGTATTGGCCTCTGGGCTCCCATAACGGCGGTGATGATGAACTTGTGCTGAATGAAGTTCAACTAAAGGTTACATTGGTCGACGAAGAGGAGCTGAGTAATTATATTGTCAGAACTCTCGATCTTGAAGACCTTGAGACAGGTGTTTCGCGTGAAATCCTCCACTTCCACTATATTACGTGGCCAGACTTTGGAGTTCCGTCCTCGCCAGATGCCTTCCTCGACTTTCTGTTATCGATAAGACAGTCCGGATCTCTGGATGCAGACGTTGGACCGGCTGTAATTCACTGCAGCGCTGGGATTGGTCGATCTGGAACGTTCTGTCTTGTAGATTCATGTCTGATCATGATCGAGAAAAGCACGAGTATAGATTCAATAGACCTTCGACAAGTATTAGTAGATATGAGGTCATTTAGGATGGGGCTCATACAGACGGCAGACCAGTTACGCTTCAGTTACTTATCTATCATAGAAGGAGGCAAGAAAATACTCAACAAGGGAGAGACAACTCCATCCATCGATTCAGGATTCTCAGAGGACGGTCCTCCACCTCCCCCACCAAGAACATCAAGCTTATCACCTGCCAGATCACCCAATTCACAGCAGTCATCGACAGAAGCCCCACCCAAACCTGCGCGACTAGCCAGGGAAAGCGTGGAGAACGGAACCGATAATGATGCAGTGTTAGAGAGACTACGAGGCAATGAAAATGACAGTACATATGAGGTGCGACGAAGGAGGAGAGATGAGCGAAAGAAAAACACAGAATCTATGATAAAACAAATGAAAGCAAAACAAAAGAAGAGTGAACTTTGGAAGAAAAGGAAAACATATCTACGTCCTATCTGTATTGGTTTATCCATTCTACTCGGCGGTCGTTCCGACGCTAGGGCAGAGAGCGACATGCTATCCTTACACCCCAAGGCGTCTGAGGCTTTCGATGACGACCCGTCTGCGCACAATACGTCAGACTGTGGGTCTTTTCGGTCGTCACAGTCTGGCATCGGTAAGGCAGAAGCTGCGGATCGTGATTTCCTATCCACGGATTATCTCATCTATATGCTTCTTCCTACTGAACTATGTACTCTCAAGCTCACCTGGCTCGCCCTGCGCACTCGTACCACCGTCTTCAAAATGCATCGAGAACACGATCTATCTTACCTGTGA

Transcript

Sda_chr07g00161.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00102	Y_phosphatase	Protein-tyrosine phosphatase	Domain	Interproscan
PF07727	RVT_2	Reverse transcriptase (RNA-dependent DNA polymerase)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000242	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR000387	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR003595	Domain	Protein-tyrosine phosphatase, catalytic	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR013103	Domain	Reverse transcriptase, RNA-dependent DNA polymerase	Interproscan
IPR016130	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR051985	Family	Non-receptor type tyrosine-specific phosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46047	TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 61F	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004725	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0004726	Molecular Function	non-membrane spanning protein tyrosine phosphatase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0016311	Biological Process	dephosphorylation	Interproscan
GO:0019901	Molecular Function	protein kinase binding	Interproscan
GO:0035335	Biological Process	peptidyl-tyrosine dephosphorylation	Interproscan
GO:0046426	Biological Process	negative regulation of receptor signaling pathway via JAK-STAT	Interproscan
GO:0070373	Biological Process	negative regulation of ERK1 and ERK2 cascade	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-