Gene detail

Detailed information of alvinactis_v1_g10264 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_5:4603508...4617333
NR annotation: XP_020906105.1, amyloid-beta A4 protein isoform X1 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g10264

ATGGACAGTAAAAAGGAATTTTCCCCTCACAGCCACATTCCATATGGTAAAGATGGTTCAGGTTTTTACTCAGACAATACCATTGGCTGTTACAATGTCATCCAAGAGGGGATTCCCTTAGTTTTAGAAGCAATAAAATCCTCTGTCGTCAAAACTGGCTCTGTGTTCACCATAGTGGATTATGGGACAGCTGATGGTGGTACTTCAATGCCGCTTATATATGCATCTGTAAAAGCAATACGAGGGAAGTATGGAGATGACATGCCAATCATGGTCGTCTATGAGGACCAACCAGTCAATGATTTCAAATCATTGTTCATGAGGTTACAAGGTCTCATGCCTGGACCACCGTCCTTTCTTATGGATTTTCCTAATGTCTTTGTCATGGCTTGCGGCACAAATTTCTACAGTCAATGTGTTCCAAGTAACAGTTTGAACCTGGGGTTTTCTGCGACAAGCATGCATTGGTTGAGAGAAAAACCCTGTGACATCACTGGAGCACTTCACCACACAATGATGTCTGACCCAGAAGAAAAAGACAAGTTCTGCAAACAAGCAGAGAAAGATTGGGAGCTCATCTTGTTGAAACGAGCTGAAGAATTAGTGCTAGGGGGCAGTATGGTACTTATACAATTTGCAGTTGATGAACAGGGCCAGTATCTTGGTCACACTAATGGCTCCAAAGTATCAATGTTTCACCAGATGTATGATTTATGGCGAGGTCTTGTAAATGAAGGAAGAATAACTGAGGAGGAATTCCAGCGTACAACGTTCGTCAACTATTATCGAACTGAAGAAGAGTTCAAAAAACCCTTTAAAGAGGCTGATTCTCCTGTCTCTCAAAAGGGCCTTGAGTTGGTTTCCATAGAAACGCGCGTCGTTCGATGTCCGTATCATCAGAGATGGATGACAGAGAAGGGAGATCCCAAAGCACATGCTAAATGGTATATCCCCACCTTGCGTACTTGGAGTAACTCTACATTTTTGTCAGGTTTGTCAGATTCTCGTTCAGCCGAGGAAAAAGCCGACATTGTAGATGAGTTGTTTCAGCGCTATGAATCTGAGGTTGCCAAGGCCCCTGAGGATCATGGGATGGATTACGTACATGCCTACATTGTCGTGCAGAAAAGGCGTCAGAAAAGTAATCCTTTCTCTCAGCATCTTGAAGTACACAGTAAGGTTTTCTGTGCCGTATCTGCAGACAATCCAAAACCATTACAGCATGAGGCACAAGTAGCGTTTTGGTGTGGAAAGGTGAATCAACATGTTGATCTCAAGACTGGTCATTGGATCACAGACAAGAATGGCAGATCCATGTGTGCCACCAGCAAAGAACAAGTACTAAGGTACTGCAAGCATACATATCCTTCACTGCAAATCAGCAACATAGTGGAGGCCAATAGCCCTATTACCATTGATAAATGGTGTGATCCCAAAAATGTCAATTGTACTGGGACTAAAGACATTGTGACATACAGATGTTTAGTTGGCCCATTTGAAGCTGATGCATTACTGGTACCAAAGGGCTGCAGCTTTGGTCATCTTCACAAAGGAAGTAAGTGTAAGTCACATGATGTCTGGCGCTCCAAAGCAGAAGGCAAGTGTGACGACCAAGCAATGAAACTCGAGCACTATGGCGTCTTGACCCCATGTGGAACAGGGATGTTTACAGGTGTCGAATACGTGTGTTGCCCCAAGAACATGACAGTTGAGAAGCCTAAAGAAAACCCTGTGATGAAGCTTCAGGTTGGTGGTCGTGAAGATGTTGATCTCCCCAGACCAACTGAGCATCCAATATCCTTGATAGAGAAGTTGGAAAAGGAGATCAAAAAGTACCCCAAGCACTTGAGTGGCAAGTCTATGGGTTGTGACCATAAGAAATACCATCGCCATCGTCAGTCCATGGAAATTGAACATCGCAACCGCATGTCAAATGTTATCAAAGAGTGGGAAAATGCTGAGAAACGTTACAATGCCTTGAAGAATGAGGATCCTGCACAAGCTGAACAAATGATCACTGGAGTTATGGATCGATTCAAGAAGATTGTTGGCATGCTTGAGAAGCAGGCAAAAGTGGAGCGTTTCAGTATACACGAGGAACACATTCAGTGTATGCAGATAGATCTGAACGACAAAAAGAACAAGGTTTTGAGGTCATTTTTGAAGGCCTTGAAGAAATCTCCACCAGATGAAAATGCAATCCTTAAAGCTATGAGAAAATTCATGAATGTCAGTACTGAAGACCGCATTCACAATCATCATCACTTTGAGCGCATGGTAAGATATGATCCTGACAATGCTGACAAGTTAAGGAAGAATTTCCAGAATCATCTGAAACACATCAATGAGCAAGTAAACTTCACAATGACGCTGTTGTACAAGGTGCCAAAGATTGCTCGTAAATTCTTCTTAGAACTACCATCATGGGTACCCAAGCCACAACTGCCAACAGAGAAGCCGACGACGCAGGCCAAAACTGAAGCAGTGATGGATGAGGAGAAGATAGAGATGAAATCCAAAAACAAAGAGAGGGATGAAAACAGGCATACATCCAAGCACCATAAACATGACCATGTCAAGGATTTCCTGGGGATGTCTTCACAGAAGAAACAGAAGAAACACCACAAAAATTTAAGCAAGGAAGATGAGCCAGAGGATGAGGAATACTTTGAAGATCATCATTCCCCAGCCACATTTGCCGTTGTAATTGGGTTGAGCTGTGGTGCTTTAGTCATTATGGTTATCATCATAATTACCATGGCGATGCGAAGGTCGAGGAGGAACAACCCAACAAGGACCGTTCTTGTTGACCCTGATACGGATGGCAACACTGAAAAGCAACATCTTGCTAACTTACAGCAAAATGGGTATGAAAATCCCATCTACAAGCTCAGCAGCACTTACTAA

Transcript

alvinactis_v1_g10264

Protein

Uniprot

Uniprot term	Description
O93279	Amyloid-beta A4 protein OS=Takifugu rubripes OX=31033 GN=app PE=3 SV=1
O73683	Amyloid-beta A4 protein OS=Dichotomyctere fluviatilis OX=2593188 GN=app PE=2 SV=1
Q95241	Amyloid-beta precursor protein OS=Saimiri sciureus OX=9521 GN=APP PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10515	APP_amyloid	Beta-amyloid precursor protein C-terminus	Family	Interproscan
PF12925	APP_E2	E2 domain of amyloid precursor protein	Domain	Interproscan
PF12924	APP_Cu_bd	Copper-binding of amyloid precursor, CuBD	Domain	Interproscan
PF02177	APP_N	Amyloid A4 N-terminal heparin-binding	Domain	Interproscan
PF03492	Methyltransf_7	SAM dependent carboxyl methyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036454	Homologous_superfamily	Amyloidogenic glycoprotein, heparin-binding domain superfamily	Interproscan
IPR036669	Homologous_superfamily	Amyloidogenic glycoprotein, copper-binding domain superfamily	Interproscan
IPR029063	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR042086	Homologous_superfamily	Methyltransferase, alpha-helical capping domain	Interproscan
IPR008154	Domain	Amyloidogenic glycoprotein, extracellular	Interproscan
IPR008155	Family	Amyloidogenic glycoprotein	Interproscan
IPR019543	Domain	Beta-amyloid precursor protein C-terminal	Interproscan
IPR024329	Domain	Amyloidogenic glycoprotein, E2 domain	Interproscan
IPR036176	Homologous_superfamily	E2 domain superfamily	Interproscan
IPR019744	Conserved_site	Amyloidogenic glycoprotein, copper-binding domain conserved site	Interproscan
IPR011178	Domain	Amyloidogenic glycoprotein, copper-binding	Interproscan
IPR015849	Domain	Amyloidogenic glycoprotein, heparin-binding	Interproscan
IPR005299	Family	SAM dependent carboxyl methyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23103	ALZHEIMER'S DISEASE BETA-AMYLOID RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008201	Molecular Function	heparin binding	Interproscan
GO:0046914	Molecular Function	transition metal ion binding	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0008168	Molecular Function	methyltransferase activity	Interproscan