Gene detail

Detailed information of alvinactis_v1_g10753 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_5:11591024...11598405
NR annotation: KXJ29789.1, U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g10753

ATGGCCGTCGAAGAAGGCGAAGAAGAGAAAGAAGTGTCAAAAACCGGGCAAGAAAAGACAAAACTAAGTCATAAGAAATGGAGGCGCCTTCTTCAAAAGGAAAAGCGCCGTGTGAAGCGACAACAACTAGCGGAGAAGAGAAATAAACTCGAAGAACAAGAAAAATGGAGGTTTGAAAATGACTCTATCTACAGAGCGAGACAAGAAGCAAAAGAGAGAGCAGTGGAAAAGAAATGCCATCAAGAAGAAGAAGAAAGTAAAAAGCAGGAGAAATTATGGCTGGAGAGAGAAGCTCAAGCACAAATTGCTTTTACTAAAATGAAGGAACGGGAAGAGAAAAGAGAAAGAGAAAAAATTACACAAGAGACAAGAATCAAGGAGGATTGGGAAAAGGAACAGAGAACTAAAAAAGAGAAAGAAGAGAGGAAAAAACAAGAAATCCATGACAAAGAGAATGCTGTGTTTAAAGAGCTTGAGAAGCCTGCTGTTCAACAGAATACATCGACTGCAGGCCAGTGGCACAACCCCCTTGCCCCACCCTCACAGAATTATGGCACTGAACAGGATGCTGTAAATTGCTCCTTTTATCTCAAGACCGGAGCCTGTCGTTTTGGAGAGAGGTGTTCACGTGCCCATCCTCGTTTACCGGCAAGTGTGACTCTGTTGATACCCCATATGTATCAGGATATAAGATTGTCGCAAACCATGCTGGATGAGGCCGATCATGATACAGGCCTAGAGTTTGATGACGAGGAAGCTAACGAACGATATAAAGCCTTTTTTGACGACGTGTTGGCAGAGTTTGAGAAAGCTGGAAGAGTTGTACAATTCAAGGTTTGTTGCAACCATGAACCGCATCTGAGAGGGAATGTGTATGTCCAGTTCTCAAGTGAAAACGAAACTGCGCAAGCCTTTGCCGCGTTCAATGGCCGTTGGTATGCTGGTAGACAACTGTCCTGTGAATACTCTCCCGTCACTAAATGGAGGTCCGCCATTTGTGGTTTCTTTACACGTAACCGGTGTCCACGTGGCAAAAACTGCAACTTCTTGCACGTGTACCGTAACCCTGGCAACGCCTTTAGAAATATGGACAGGGATGACTCGTCTCCAGGTCGAACGCCATACAGCGAACGAGGCTCTGAGCGTAGCACGAGGGACTGGAGTCGACGGGAAGTGAGGGAAGGTAGCGTGCGAGACAGAAGTTATGGAGGAACCAGCAGACGCGAATGGGATTATGAACAGAATAGAGATCGTCGTGACCGCTACGGTCGTGATAGAGAGCGTGACAAGAAGAGAAACGGtcgtgaccgttatggtcgtgatcatgaaggtgatcgtgatagagaacgtgatgatcgtgatgatcgtgatagagaacgtgatagagaacgtgatgatcgtgatagagaacgtgatgatcgtgatgatcgtgatagagaacgtgatagagaacgtgatgatcgtgatagagaacgtggtgatcgtgatggagaacgtggtgatcgtgatagagaacgtggtgatcgtgatagagatcgtgatgatcgtgatagagatcgtgatagagaacgtggtgatcgtgatggagaacgtggtgatcgtgatagagaacgtggagatcgtgatcgtgatggagaacgtggtgatcgtgatagagaacgtggagatcgtgatcgtgatagagaacgtggtgatcgtgatagacaacgtgatagacaacgtgaccgagaggttaacggtcgtgatcgttatggtcgtgatggtgatcgtgatAAAAAACGTGATGAGTCACAAACACGAGATCGATTTGGACGAGATATCGACCTTATTAACGAAAAGAATGACCGAATAATCAACAAACCACATGATCGACGCTCAAGGTCACAGGAGAAGAAATATTCAAATAGTGAAGACGATGATGAAACAGTGCGCAATAGTAACGCAGACGATGATGAGCGGGGCAGAtcacgtgattaccaaaagtcacgtgatggtcaaagtatgtcacgtgatggccaaagtatgccacgtgatgaccgaagtatagcacgtgatgataaaagtatgccacgtgatgaccaaagcatatcacgtgatgaccaaagtatgccacatgatgacaaaagtatgtcacgtgatggccaaaatatgtcacgtgatgataaaagtatgccacgtgatgatcaaagtatgtcacgtgatgcccaaagtatttcacgtgatgatcaaagtatgtcacgtgatgcccaaagtatatcacgtgatggccaaagtatgacacgtgacgaccaaagcatgtcgcgtgTAAATGGGAGTATTAGTGATGCGAACAGCGACAAGAGTTCTGTGTCGTCTAGTCGGCATCGTAAGCGGAAACACCACTCTTCGCACAAGCACCACAAAAAATCCAAAAAGAAGCACAAGAAACACAAAAGAAAAAGATTGCTAAGTATCGGCGACGAACGAGACGAAGACACGAACAATGTACAAACCACAGAAGACACGTCTGTCAAATAA

Transcript

alvinactis_v1_g10753

Protein

Uniprot

Uniprot term	Description
Q62377	U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 OS=Mus musculus OX=10090 GN=Zrsr2 PE=1 SV=1
Q15696	U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 OS=Homo sapiens OX=9606 GN=ZRSR2 PE=1 SV=2
Q15695	U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 OS=Homo sapiens OX=9606 GN=ZRSR2P1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF00642	zf-CCCH	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR003954	Domain	RNA recognition motif domain, eukaryote	Interproscan
IPR036855	Homologous_superfamily	Zinc finger, CCCH-type superfamily	Interproscan
IPR009145	Family	U2 auxiliary factor small subunit	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR000571	Domain	Zinc finger, CCCH-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12620	U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005681	Cellular Component	spliceosomal complex	Interproscan
GO:0030628	Molecular Function	pre-mRNA 3'-splice site binding	Interproscan
GO:0089701	Cellular Component	U2AF complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24273	ZRSR; U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein	-	Spliceosome	ko03041	deepkoala