Detailed information of alvinactis_v1_g12222 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_6:3646297...3661202
NR annotation: XP_020899048.1, roquin-1 isoform X2 [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P0C090Roquin-2 OS=Mus musculus OX=10090 GN=Rc3h2 PE=1 SV=1
Q9HBD1Roquin-2 OS=Homo sapiens OX=9606 GN=RC3H2 PE=1 SV=2
Q5TC82Roquin-1 OS=Homo sapiens OX=9606 GN=RC3H1 PE=1 SV=1
 Gene family
Gene familySubfamily
Transcription Factors Familyzf-CCCH

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF18386ROQ_IIRoquin II domainDomainInterproscan
PF08840BAAT_CBAAT / Acyl-CoA thioester hydrolase C terminalDomainInterproscan
PF21206Roquin_1_2-like_ROQRoquin 1/2-like, ROQ domainDomainInterproscan
PF04775Bile_Hydr_TransAcyl-CoA thioester hydrolase/BAAT N-terminal regionFamilyInterproscan
PF00642zf-CCCHZinc finger C-x8-C-x5-C-x3-H type (and similar)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR041523DomainRoquin IIInterproscan
IPR029058Homologous_superfamilyAlpha/Beta hydrolase foldInterproscan
IPR000571DomainZinc finger, CCCH-typeInterproscan
IPR014940DomainBAAT/Acyl-CoA thioester hydrolase C-terminalInterproscan
IPR048575DomainRoquin 1/2-like, ROQ domainInterproscan
IPR036855Homologous_superfamilyZinc finger, CCCH-type superfamilyInterproscan
IPR006862DomainAcyl-CoA thioester hydrolase/bile acid-CoA amino acid N-acetyltransferaseInterproscan
IPR052249FamilyRoquin domain-containing proteinInterproscan
IPR042490Homologous_superfamilyAcyl-CoA thioester hydrolase/BAAT, N-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13139RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0000209Biological Processprotein polyubiquitinationInterproscan
GO:0000288Biological Processnuclear-transcribed mRNA catabolic process, deadenylation-dependent decayInterproscan
GO:0003725Molecular Functiondouble-stranded RNA bindingInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0006511Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0010494Cellular Componentcytoplasmic stress granuleInterproscan
GO:0035613Molecular FunctionRNA stem-loop bindingInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan

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