Gene detail

Detailed information of alvinactis_v1_g12279 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g12279	NEMITIN (NEURONAL ENRICHED MAP INTERACTING PROTEIN) HOMOLOG	chr_6	4344735	4355421	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g12279

ATGACCATGAACATGAGTGCCTCGGTTTCCATTGAAGAAAATGAAGTAATTCGTTTAATCGTACAGTTTTTAAGCTCTCGTAAACTTCACAAATCCACAAGAAACTTGGAGAGAGAGAGTGGCATTACGAACTGTAGCTACAATGAAGATGTCCTTTTTCTTCGCCAGCTTACTCTAGATGGAGAATGGGATGCTATTTTGACTTTTGCTCAACCGTTGGAGCAAATTGAAGGATTTGATGCGAAGAAATTCCGTTATCTGGTACTCAAGGAGAAGTTTATGGAAATATTGTACTTCAAATCTGGATTTGAAGGAAGTTCTTCGAGTTATTCCATTGATTATATGATTAAATGTTTGGAACAACTGGAGAAGAACTGCCCTGTTAAGAGTGATTACACGAAACTATGCTGGTTATTGACCGTACCTGATCTCTATGATCAACCAGAGTACAAAGACTGGAACCCAGAAACTGCAAGACTGGAATGTTTTGGTGAAATAGTTCAACTACTAAGGAATGTCATTCCACTTGAGAGAGAAAATGGAAGCGAAAAAGTTCCACACAGCCCTGCACAAAACAGACTTGTGACTCTTATAGTTAAAGGCTTGTGCTTTGAGAGCTGCGTGGACTACTGTCATCAAAGAGCAGTCAGCGGTGAGCTACATGTAGAGAGAGACGTGATATCTATCAGCCAGGATGTATTGTGTGGTAGCTTGCATGAGAGCACTGGTAATTTTCTGTCCTGGCTCCATAGTCTGCCCCGAGAAAGCTTCGTTATCCCATTTGATCCTATGTCTTTAAAAGTTGACTTGAAAAAGTCTTTACAAAACAAGAACTTCCAGTTATCAAATAAGAGACTTCAGAATGAGGCTGGAAATCTTTCTAAAAGTTTGTCCATCACAACTAGGCCCTCGACGGCAAGTAAAGTGGAATCAAATGCTGTGCCTGCAGCTCTAGCAGGTGTGAAGAAAGTATCAAGTTCTTATAGCGGCTTTCATTACACACAGCCCAACATGGCTTTCCGACCTATTCATCCGGATTCAACGAATGCTCAAGATTCAGGGATCCACAGAAGAGATTCGTTGAATGAAGCTGATGTTAGAGAGAATGTCCAATCCCCTGATAATAGGGTTGATACTCGCCCCTCCCCTGACAGAAATGACAACAGACAATCAAGTCAACTCCCTCGTAATGTCATTGAAGACAGAACCACTGCACATACAACAGACTCCGGTATCATGAATAAACCAACTTTAGCTGAAAGGGGAATTTACGACAGCCAAGACTCTTTGGATCAGCTCAAACGAAAACAAGAATACAGTGTACTAAGACAGCTTGAAGAACATGAAAGACAGCAGGCAGAACTAAGGCGACAGCTGATGGAGAACTCAAATGCACATGCAGTGTCTAGTGAAATATCACAGCCACAAGCTAGACTTCCATCTGACAGGGACTGTatgcactcggagatcttccacgagcataaatcatctgagggttttgaggatcgtggtgaaacaagttcacaaacaactgggtacaacagatcaaaccgtctggataatgtatcgaacccaagtaacagaatgcactcagagatcctacacgagcataaatcatctgagggatttgagcatcgtggtgaaacaaattcacaaacaaatggaacaaatgggtacaacagatcaaaccgtctggataatgtatcgaacccaagtaacagaatgcactcggacatcttacatgagcataaatcatctgagggttttgaggatcgtggtgaaacaagtccacaaacaactgggtacaacagatcaaaccgtctggataatgtatcgaatccaagtaacagaatgcactcagagatcctacacgagcataaatcatctgagggatttgagcatcgtggtgaaacaaattcacaaacaaatggaacaaatgggtacaacagatcaaaccgtctggataatgtatcgaacccaagtaacagaatgcactcggacatcttacatgagcataaatcatctgagggttttgaggatcgtggtgaaacaagtccacaaacaactgggtacaacagatcaaaccgtctggataatgtatcgaatccaagtaacagaatgcactcggagatcttacatgagcataaatcatctgagaattttgaacatcgtggtgaaacaagtccacaaacaaatggaacaaatagctacaacagatcacaccatctggataatgtatcgaacccaagtaacagaatgcaAAGAGAACCACCCGTAGGAAAAGAAGTGTCACCTAGCTTTAAAGATGAGCCCAAACCACCAACACACATAACATCTACTCCAGTAGCAAAGAAAAAGTCCATCCCAGAACCACTAAAACTAGACAACGTTAGCATTTCACATATCGAGGGACCAAGTACGAATGAATCACAACACAAAAACCATAGTCAGATTAACCAATCACACAGAGGGGTGAATGAACCTGAGGGTGACCCAGTAGTAGTCGATCTGTTTCCTAAAACTCCAATAGCAAACATGTTCCCACCTGGTCACTGGATTGCCTTGACTGATGGAAGTGGGATAATGAACACAAGTACCCCAAAGTCTTGCAGACAAAAAATGTATAATACACCGTGTCCCCCTGAATCTCCTGTGAGCAGTGCTATTAATCAGCCTAATTTTGACAATGTATGTGATGTAGCTGGAACTGAAGGTGAACAGATTCCATACTATGGTGTACAGGACAAAGCAGGGCCAGTAATTCCAGACAATGAGACATCAACTACTCGTAGAGGACCCAAAATTAATGGTGTACGGAGAACACTTGTGTCCAATGGCCCACCGATGGCTAGAAATAAAGGTACACCCACACTCACTGAAGAGACACGAGAGGCAAAGACACCTAGACAAGACAAAGCTACACCCAAGAGTAAGAATCAGTCATCTTTGGGTAACACTCCAAGAGATCATCCATCTGCTAATCAGAAGCAAGGCATCAAGAAGAAGATGAATAGAGAGGACAGTGTCAAACCAAAGACTGTTGGAAATACATTtgttgttggtcatgTTGCCCAGGATTTATCCACTAAACCTGGCAAAACGAATAGTGATATCAAACAAGGTGCAGCTAATGTAACATATCACAAACCTGCTAACAAACAATCAACAGTGAATCAGCAGCAGAGAGAAATTAGCCAGATGATGGAGAGACAGAGAAAACACTTAGAATCCAATACTGGTGGAATACGGTTCTGTGCAGTTGCTAGTCTGGAGGATGTGCAGGCCATACGAGCTGTTGCTTTTCATCCTTCGGGGGATTTATTTGCCATTGGTTCCAATTCTAAGACTTTGAGAGTCTGTGCAGCAACTGGACTGAATGCATACAAGAAATTGGATAGCAACGAAGACAACTTGGTCCCTCCACAGCCTACTATCCTATTCAAACGTAATCGCCATCACAGAGGGTCTATCTACTGTGTGACCTGGAACAATACTGGCGACATGATCGCTACAGGTTCTAATGACAAAACAATCAAAGTGCTCCGTTTTGATGCTGAAAACTGCACTCAGAGTGGGCCTGAAATGGAGCTGAATATTCACAGTGGTACTGTGCGTGACTTGGCATTTGCGCACAGGAGTGGAGGAACAACAGTACTTGTATCTGGAGGGGCAGGTAATAACCATATCCAGATTTCTGACTGTAGTACAGGTAACACCGTAGGACAACTAAAGTCACACTCAGGACACATCATGAGTATATTTGCAGCCAAGGATGACATCATTGCGTCAGGTTCTAATGATAATACCGTGCGTCTGTGGGACTTAAGGTCTCAGCGATGTATTGATGCCATAGCAACTGGCGACAGCTGTGTGAATTCAGTATGTGTGAATTCAGCGGGTACTTTGCTTTCATCAGGTCATGAAGATGGTGGTTGCATGATCTATGACATTACAGCCGGCCGGACACTTCAGTCCTTCAAGCCGCACACCTTAGATTGCAGGTCTGTGCGCTTCTCACCAGATGGTCATTACCTACTGACAGCGTCCTACGACACTAGCGTTATACTACTTGATCTGCAGCACAATCTTGAATGCAGTATCCCTCCGTATTGCGTGGTGGCACAACACAGGGATAAGGTCATTCAGTGCCGATGGCATCCAAAACTTATGGCATTTGTGAGTTCTAGTGCTGATAAGAGAGCTTGTTTGTGGACTCTGGATTGTTGA

Transcript

alvinactis_v1_g12279

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF12894	ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	Repeat	Interproscan
PF17814	LisH_TPL	LisH-like dimerisation domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR006594	Conserved_site	LIS1 homology motif	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR024977	Domain	Anaphase-promoting complex subunit 4-like, WD40 domain	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR040067	Family	WD repeat-containing protein 47	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19863	NEMITIN (NEURONAL ENRICHED MAP INTERACTING PROTEIN) HOMOLOG	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-