Detailed information of alvinactis_v1_g1262 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_1:21346559...21367365
NR annotation: XP_020902667.1, WD repeat and HMG-box DNA-binding protein 1 [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
O13046WD repeat and HMG-box DNA-binding protein 1 OS=Xenopus laevis OX=8355 GN=wdhd1 PE=1 SV=1
O75717WD repeat and HMG-box DNA-binding protein 1 OS=Homo sapiens OX=9606 GN=WDHD1 PE=1 SV=1
P59328WD repeat and HMG-box DNA-binding protein 1 OS=Mus musculus OX=10090 GN=Wdhd1 PE=1 SV=2
 Gene family
Gene familySubfamily
Transcription Factors FamilyHMG
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400WD40WD domain, G-beta repeatRepeatInterproscan
PF12894ANAPC4_WD40Anaphase-promoting complex subunit 4 WD40 domainRepeatInterproscan
PF12341Mcl1_midMinichromosome loss protein, Mcl1, middle regionRepeatInterproscan
PF20946Ctf4_CDNA polymerase alpha-binding protein Ctf4, C-terminal domainDomainInterproscan
PF00505HMG_boxHMG (high mobility group) boxDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001680RepeatWD40 repeatInterproscan
IPR009071DomainHigh mobility group box domainInterproscan
IPR024977DomainAnaphase-promoting complex subunit 4-like, WD40 domainInterproscan
IPR036910Homologous_superfamilyHigh mobility group box domain superfamilyInterproscan
IPR022100DomainMinichromosome loss protein Mcl1, middle regionInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR048591DomainDNA polymerase alpha-binding protein Ctf4-like, C-terminal domainInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19932WD REPEAT AND HMG-BOX DNA BINDING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0000278Biological Processmitotic cell cycleInterproscan
GO:0003682Molecular Functionchromatin bindingInterproscan
GO:0006261Biological ProcessDNA-templated DNA replicationInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0043596Cellular Componentnuclear replication forkInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11274WDHD1, CTF4; chromosome transmission fidelity protein 4-Chromosome and associated proteinsko03036deepkoala

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